Scaffold Ga0272433_10001400

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001400
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42976
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F086375	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000140024	F086375	N/A	MFILFVNSKSITSXNRGENXFNEIKEHYKXQNNDHVVIFKRLHKLRQFNVXKEVNEIDKAVMKDNVRDEIKQERKNKDIHDNASQ
Ga0272433_1000140029	F001951	N/A	MMKFRFINSLKNEKERDEDTVETTVTKMTIFEFKKLLVNAEMFLTLMNKTMTKMKQD
Ga0272433_1000140030	F009580	N/A	VKRLKLVNKIIYIQISEHDLAQKLNFSHRQRDFFIYTDNIIVINVHDMQNEEFLVXTFFNNFAXMLQLAVVTQLSLVTNFLNLKNDQNLILNDDNDEIQIH