Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10001372 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10001372 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43513
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (12.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

43513

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (12.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F023763	Metagenome	208	Y
F061399	Metagenome	131	Y
F068292	Metagenome	124	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000137216	F068292	N/A	MLRQDTQSAEQXVNQKEVHSQQESSTLFDNKNKNDHHKFIKLSNSFIFIETDDSIXKTXNIKIVDKLDVNANHYFTEKIHIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVTLKQLNKFFNSFYSEFTRIFSFLNYDDVILTNNIQNKINNHLQNALSVYFIKFSSLDKLKIFLQDVNNK
Ga0272433_1000137233	F061399	N/A	MNYVDSLSLSIFMSITYKYILIFIDHFIKMRHLVFTTFMKVEEVINCFYAYVXKHHDLLKFFMSDXDIQFIFDVXKHMCKMLKINIKLSTTYHSEIDDQIKRINAVMKYYLQVFVNYMQNNXVKXLSEVKFVINNASLLIILASLFLINSSQNLCLNFKFSESLFKNLMFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNLSRRSYFKYFVEDEVXLNACNLSITHLTIKLNNHNIDLFKIKHIFKNNSLIIELNLSTFIKIHSIFHVILLNHIASDFLLSQHQKLXKLIIIKNDEKFXYVNSILNFKRDKYYSSSLLKYYVDXENHFSTXKSFHLLNNCEQALDEYHLVNSVIEESHVLSCVMFQYQCQEL
Ga0272433_1000137234	F023763	GAG	MNFQNCLMLILMLRIECILLFRKIFXVTCQSIQLIVDLVEMISNMIVESKQKLTSTSLMMTQLLNXHEILKIFVICDHFNKVNKVFKLXSSFLESANNDHEFFIVDFVVTLDXVMFLRKVSNXMKNFIFIILKENVFEHIVXSIDFYHNLVIXIIMMKNNFKSEDFLKNVKCNLTFLKSDKEYIFSDETSERDSYSTIVIDESSIKVREI
Ga0272433_1000137244	F004755	N/A	VNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFIXINQLVQPDFLKEIHFYLIHLNNDQRVIQKIKNKVNLIKRVNDLSEIIFHKAVVTQSVDHSKSDHLKSRDAILTNVKKADVLVKICFICHKSDHSFKEYLDQSTRINAVNDEYDCFDFNSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10001372

Overview

Ecosystem & Geography

Associated Families

Sequences