Basic Information | |
---|---|
Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001372 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 43513 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004755 | Metagenome | 424 | Y |
F023763 | Metagenome | 208 | Y |
F061399 | Metagenome | 131 | Y |
F068292 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0272433_1000137216 | F068292 | N/A | MLRQDTQSAEQXVNQKEVHSQQESSTLFDNKNKNDHHKFIKLSNSFIFIETDDSIXKTXNIKIVDKLDVNANHYFTEKIHIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVTLKQLNKFFNSFYSEFTRIFSFLNYDDVILTNNIQNKINNHLQNALSVYFIKFSSLDKLKIFLQDVNNK |
Ga0272433_1000137233 | F061399 | N/A | MNYVDSLSLSIFMSITYKYILIFIDHFIKMRHLVFTTFMKVEEVINCFYAYVXKHHDLLKFFMSDXDIQFIFDVXKHMCKMLKINIKLSTTYHSEIDDQIKRINAVMKYYLQVFVNYMQNNXVKXLSEVKFVINNASLLIILASLFLINSSQNLCLNFKFSESLFKNLMFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNLSRRSYFKYFVEDEVXLNACNLSITHLTIKLNNHNIDLFKIKHIFKNNSLIIELNLSTFIKIHSIFHVILLNHIASDFLLSQHQKLXKLIIIKNDEKFXYVNSILNFKRDKYYSSSLLKYYVDXENHFSTXKSFHLLNNCEQALDEYHLVNSVIEESHVLSCVMFQYQCQEL |
Ga0272433_1000137234 | F023763 | GAG | MNFQNCLMLILMLRIECILLFRKIFXVTCQSIQLIVDLVEMISNMIVESKQKLTSTSLMMTQLLNXHEILKIFVICDHFNKVNKVFKLXSSFLESANNDHEFFIVDFVVTLDXVMFLRKVSNXMKNFIFIILKENVFEHIVXSIDFYHNLVIXIIMMKNNFKSEDFLKNVKCNLTFLKSDKEYIFSDETSERDSYSTIVIDESSIKVREI |
Ga0272433_1000137244 | F004755 | N/A | VNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFIXINQLVQPDFLKEIHFYLIHLNNDQRVIQKIKNKVNLIKRVNDLSEIIFHKAVVTQSVDHSKSDHLKSRDAILTNVKKADVLVKICFICHKSDHSFKEYLDQSTRINAVNDEYDCFDFNSNFDSKN |
⦗Top⦘ |