Scaffold Ga0272433_10001358

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001358
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43849
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F026450	Metagenome	197	Y
F029296	Metagenome	188	Y
F078020	Metagenome	116	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000135816	F104134	N/A	MSIVVCTSCVSTAKIQRATCVELTISFAHVXVFFRFAXASELTAXRKMSLLLSLQSDMIKSLXFVNTSAILCRICSINFFCISFISLLFIILIMTSHFLQSDDESSLRRCFLVVISSLITFAYDMIFVERRMLLCVCNCLLSSXIDVFSFYTSFAMNMFXFTXCFSSELSXRHQISFNAISFHEXSLLFSFSNVDIFISRLIMLVTFSSSLHKHFNFAFLFSCDESTLLAIIFESALLRFMQFIVIQSSSKFTLSCL
Ga0272433_1000135822	F002432	N/A	MKFSDNSNIFSITSMILFYFNKEFHSXISFDSDITDYETTCERLEARKANDIVIQMKELLNFDHQQLKRTKLIIEIQINKHRXNITYEIDDXVXLSFKNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQSYSENFLSEQHSKSLRSIIIKDNEH
Ga0272433_1000135825	F029296	AGTAG	MNKHRXNIIYEVDDQVXLVFENIKITKSCKDLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSNNSLLKQHSELSRLMIIEENEEHXEVDDILNFRRYRERLQYKIKXIEINHDDEXYYVDKGKFDDSKKVLNKFHKLYSNKSH
Ga0272433_1000135828	F078020	N/A	MQFFFDRLINAXKDAALTLNIEKFFFKAVEADCXSILRAELIEEFDDHDHFECEALTDIEKTKMKAFNXFEKTMTSFCIFSSISFLFIQNFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFFVSFPLYSLINFSLASCMSXISSFXHI
Ga0272433_1000135830	F026450	N/A	MSCFFKERFEASFFIVEDNDSFAEIITFSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSEXVKLSYVHFRLFDNAAEITQSRRERDCFNSYKIVNELLKELAQLFNDSDKEVDFCRNYYNLIQEQKKFSKFYTQFQRLFFYLNYQEKQLIVDLKDKINFQLQFTXITQLIQLSTLKEIRFYLIRLNNDQQAIQEIKNKEAMIKA