Scaffold Ga0272433_10001292

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001292
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45579
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (25.49%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y
F018839	Metagenome	232	Y
F028367	Metagenome	191	Y
F037508	Metagenome	167	Y
F061401	Metagenome	131	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000129212	F018839	N/A	MIAKVVTFNRLTSDLYAAVFIIAMFIESKDEAKLIKLDDFMILLNEDDFSLSXVMTEEINLFSI
Ga0272433_1000129213	F000597	N/A	MKDVLISLTMSSSNDLFASKSLTTECVLFSNEISYSLKSLIDIEVADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTV
Ga0272433_1000129215	F037508	N/A	VIFRLEDDVDQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIQKCYHEYIALKQLNKLFSSFYSEFTRIFNFLNYDDVTLINNIQNKINNYLQNALSVCLIKFSSLDKLKIFLQDVNNKQXVNYQLRDEQ
Ga0272433_1000129217	F061401	N/A	LNNDQRVIQEIKNKVNLIKHVNDLSKTIFHKAVVTQSVDHSKSDHLKLHDAILINVKEADILVESCFIYHKSDHSFRECLDQSTRINTVNNEYDRFDFNLNFNSKN
Ga0272433_1000129218	F028367	N/A	LCKLDEILSEENYFEKSFLIDVFLNSQNQSFSLCSLINSDSVSHMLIHVNLVNRVCKKLEIQFISLTKEKLIRDYDEKIFKKIIIHKILFNLIIESHKKLTVSMLIADIDYHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISLNSKHLS
Ga0272433_1000129227	F086377	N/A	MIQHFXDQKQRILILDCDSVQILIVHAEAKFFFEFLDEKNRDDCLRATDSNEIFAQIFIQITMKF
Ga0272433_1000129231	F009580	AGCAG	MIKVRMRRLKLVNKIICIQIFERDLAQRLDFFRRQRDFFIYIDDITVVDVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDKA
Ga0272433_1000129235	F087978	N/A	MFSSKLLQSYSEDFLSEQHAESLRFIIINDDNDEHXEINDILNFKRYXDXIQYKIKXKDLDRNDEXYYVDKDEFNDFKKVLNEFHALYSRKSR
Ga0272433_1000129236	F003820	N/A	MKLFSYLEYDDCILMNDFQNKINNRLQNALSVCSKNFTSLTRLKIFLQSVNSKQRVNYQLCSERCTVIVKVTVVSDKCATSLSVITSIINYVKLIISSTSKSVRSLIICYICKIFDHLFKNCSQLNKIDTSASHAFISHLHEIIISKNKKNEKISSSSKNNETKN
Ga0272433_1000129242	F008169	N/A	MSKHSFTKEYFKEFQSHFSQTSETNSSKLSSVESFIHEDDKSFAETVILSVSIENXKTXCMILDRETDQLNKLSNQRDIEIKELKTRLQTKEITSSDFIYFEHSKSQKISDSFXFTDEKNSTXENXYDKIQNKLEINVNLFSNEXVKLSYVHFRLFDDAADVTQSRREHNYVNLYKIVDDLLKELAELFNDLNKKVNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINLRLRFIXINQLVQSDFLKEIHFYLIHLNNDQRVIXKIKNKVNLIKCINDLSKIIFHKAVVTQLVNHSKSDHLKSCNAILTSVKEANILVKTCFICHKSDHSSKECSD