NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001292

Scaffold Ga0272433_10001292


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001292 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45579
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (25.49%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F008169Metagenome337Y
F009580Metagenome315Y
F018839Metagenome232Y
F028367Metagenome191Y
F037508Metagenome167Y
F061401Metagenome131Y
F086377Metagenome110Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000129212F018839N/AMIAKVVTFNRLTSDLYAAVFIIAMFIESKDEAKLIKLDDFMILLNEDDFSLSXVMTEEINLFSI
Ga0272433_1000129213F000597N/AMKDVLISLTMSSSNDLFASKSLTTECVLFSNEISYSLKSLIDIEVADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTV
Ga0272433_1000129215F037508N/AVIFRLEDDVDQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIQKCYHEYIALKQLNKLFSSFYSEFTRIFNFLNYDDVTLINNIQNKINNYLQNALSVCLIKFSSLDKLKIFLQDVNNKQXVNYQLRDEQ
Ga0272433_1000129217F061401N/ALNNDQRVIQEIKNKVNLIKHVNDLSKTIFHKAVVTQSVDHSKSDHLKLHDAILINVKEADILVESCFIYHKSDHSFRECLDQSTRINTVNNEYDRFDFNLNFNSKN
Ga0272433_1000129218F028367N/ALCKLDEILSEENYFEKSFLIDVFLNSQNQSFSLCSLINSDSVSHMLIHVNLVNRVCKKLEIQFISLTKEKLIRDYDEKIFKKIIIHKILFNLIIESHKKLTVSMLIADIDYHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISLNSKHLS
Ga0272433_1000129227F086377N/AMIQHFXDQKQRILILDCDSVQILIVHAEAKFFFEFLDEKNRDDCLRATDSNEIFAQIFIQITMKF
Ga0272433_1000129231F009580AGCAGMIKVRMRRLKLVNKIICIQIFERDLAQRLDFFRRQRDFFIYIDDITVVDVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDKA
Ga0272433_1000129235F087978N/AMFSSKLLQSYSEDFLSEQHAESLRFIIINDDNDEHXEINDILNFKRYXDXIQYKIKXKDLDRNDEXYYVDKDEFNDFKKVLNEFHALYSRKSR
Ga0272433_1000129236F003820N/AMKLFSYLEYDDCILMNDFQNKINNRLQNALSVCSKNFTSLTRLKIFLQSVNSKQRVNYQLCSERCTVIVKVTVVSDKCATSLSVITSIINYVKLIISSTSKSVRSLIICYICKIFDHLFKNCSQLNKIDTSASHAFISHLHEIIISKNKKNEKISSSSKNNETKN
Ga0272433_1000129242F008169N/AMSKHSFTKEYFKEFQSHFSQTSETNSSKLSSVESFIHEDDKSFAETVILSVSIENXKTXCMILDRETDQLNKLSNQRDIEIKELKTRLQTKEITSSDFIYFEHSKSQKISDSFXFTDEKNSTXENXYDKIQNKLEINVNLFSNEXVKLSYVHFRLFDDAADVTQSRREHNYVNLYKIVDDLLKELAELFNDLNKKVNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINLRLRFIXINQLVQSDFLKEIHFYLIHLNNDQRVIXKIKNKVNLIKCINDLSKIIFHKAVVTQLVNHSKSDHLKSCNAILTSVKEANILVKTCFICHKSDHSSKECSD

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