Scaffold Ga0272433_10001223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272433_10001223

Scaffold Ga0272433_10001223

Overview

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10001223 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	47164
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (74.36%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001208	Metagenome / Metatranscriptome	747	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000122337	F001208	AGGA	MSEQEEALNLSYEVRVTPGRAGSDPNAPDWEVLELENGAVQDGADIFNNLTLAEANQIAGMWTKKKEDAGF

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