Scaffold Ga0272433_10001205

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001205
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47758
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (90.48%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009446	Metagenome	317	Y
F016760	Metagenome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000120522	F009446	AGAAGG	MSDLGEDVARAYEARVAVADVELTPAAIRAVVRQLGGGEGRAQVAAGNKHLAGQLGVAVRTVQRWQKEGGEARSVARSTPGLRISVRGIATEQQRQANARAFRERVMEQGLDVGPCRVMVLVYNEDRARPRSIGDMHIAGTNEGLIDALDALEDGDTAAAAGAFGNAWLGTYGLDVEAEVTDVVGTFTLG
Ga0272433_100012058	F016760	GGGGG	MRVPSGITRATRATGRGLYVLTVPKTVRRSTDDLRGVKMAPALGLVLRLTALLVLAGTVLAIRSVGHPLLGLVRDALLLVGAVVILALSGALAPQGRLVGRLLLSYAKREAGRRGLTWRGRLFRALARRLEPATPQKEKGTTNDRQR