Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001165 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48642 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.29%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F010214 | Metagenome | 306 | Y |
F028367 | Metagenome | 191 | Y |
F028368 | Metagenome | 191 | Y |
F033266 | Metagenome | 177 | Y |
F055318 | Metagenome | 138 | Y |
F096307 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_1000116526 | F096307 | N/A | MFYIVVTQINASFKENMLKHKKDVDLKNVCNTKKCVYHRNLLIICNTKKRVYLKDNKSXLKDAKEKKKCXVKSESDFN |
Ga0272433_1000116536 | F028368 | N/A | VKIISFCNLDEILSKENYFDKSFLINALFILQNESFSLCSLINSNSVVYTIIHINLVDKICEELRIQFISLTKEKLIKKYDEKIFKKTIIHKILLNLIIESHKKLTVSMLITDIDHHEVILEKSXMNKNEILLNMQINVIVFSNQLNTFISIFLISLSLKHSSXSRSTLFIFTFQSKISRMLKXFISTMIQKESFSIXSINVASFKKLLNCSKKNQTEVFTLFMKNINRKIAYNTQCNLNALNVSFIKKTTQNLKVIKVKLSSEYHDFLNVFDXVQLNKLSSNCFYNHKIELTSDSTFSCCXAYXMFSFKLLKVKKYLNENLSKKFITSS |
Ga0272433_1000116541 | F033266 | N/A | MFSYSFTEEHFKEFQNHFFQIFDVDSSKSSSAASFIHENDESFVETIIFFVFYEIXKTXSLALDEKTDQLYKLNKQQEDEIKKSVCLFICL |
Ga0272433_1000116542 | F010214 | GAG | VSVLFIYDASSLLCSSLTIFYTTISQFDLRFKDERRFLCTHDACDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXRDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVXSQSFDVXLXSIKENAFXSFSXALDFSRR |
Ga0272433_1000116543 | F055318 | N/A | MLRDDEALCVDRVQSFRDRVDFDNLNAHATKSNLHADEKVK |
Ga0272433_1000116545 | F028367 | N/A | LCKLDEILLKENYFKKLFLINIHFISQNQSFNLCSLINNDSVIYIIIHFNLVDKVCKKLKIQFISLIKEKLIKDYDEKIFKKIITHKILLNLIIENYKKLTVSTLIVDIDHHEVILSKFXMNKNEILLNMQNNVIVFFESIEYFYFNFSILFNLKHSS |
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