NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001165

Scaffold Ga0272433_10001165


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001165 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48642
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F028367Metagenome191Y
F028368Metagenome191Y
F033266Metagenome177Y
F055318Metagenome138Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000116526F096307N/AMFYIVVTQINASFKENMLKHKKDVDLKNVCNTKKCVYHRNLLIICNTKKRVYLKDNKSXLKDAKEKKKCXVKSESDFN
Ga0272433_1000116536F028368N/AVKIISFCNLDEILSKENYFDKSFLINALFILQNESFSLCSLINSNSVVYTIIHINLVDKICEELRIQFISLTKEKLIKKYDEKIFKKTIIHKILLNLIIESHKKLTVSMLITDIDHHEVILEKSXMNKNEILLNMQINVIVFSNQLNTFISIFLISLSLKHSSXSRSTLFIFTFQSKISRMLKXFISTMIQKESFSIXSINVASFKKLLNCSKKNQTEVFTLFMKNINRKIAYNTQCNLNALNVSFIKKTTQNLKVIKVKLSSEYHDFLNVFDXVQLNKLSSNCFYNHKIELTSDSTFSCCXAYXMFSFKLLKVKKYLNENLSKKFITSS
Ga0272433_1000116541F033266N/AMFSYSFTEEHFKEFQNHFFQIFDVDSSKSSSAASFIHENDESFVETIIFFVFYEIXKTXSLALDEKTDQLYKLNKQQEDEIKKSVCLFICL
Ga0272433_1000116542F010214GAGVSVLFIYDASSLLCSSLTIFYTTISQFDLRFKDERRFLCTHDACDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXRDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVXSQSFDVXLXSIKENAFXSFSXALDFSRR
Ga0272433_1000116543F055318N/AMLRDDEALCVDRVQSFRDRVDFDNLNAHATKSNLHADEKVK
Ga0272433_1000116545F028367N/ALCKLDEILLKENYFKKLFLINIHFISQNQSFNLCSLINNDSVIYIIIHFNLVDKVCKKLKIQFISLIKEKLIKDYDEKIFKKIITHKILLNLIIENYKKLTVSTLIVDIDHHEVILSKFXMNKNEILLNMQNNVIVFFESIEYFYFNFSILFNLKHSS

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