Scaffold Ga0272433_10001165

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001165
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48642
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F028367	Metagenome	191	Y
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y
F055318	Metagenome	138	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000116526	F096307	N/A	MFYIVVTQINASFKENMLKHKKDVDLKNVCNTKKCVYHRNLLIICNTKKRVYLKDNKSXLKDAKEKKKCXVKSESDFN
Ga0272433_1000116536	F028368	N/A	VKIISFCNLDEILSKENYFDKSFLINALFILQNESFSLCSLINSNSVVYTIIHINLVDKICEELRIQFISLTKEKLIKKYDEKIFKKTIIHKILLNLIIESHKKLTVSMLITDIDHHEVILEKSXMNKNEILLNMQINVIVFSNQLNTFISIFLISLSLKHSSXSRSTLFIFTFQSKISRMLKXFISTMIQKESFSIXSINVASFKKLLNCSKKNQTEVFTLFMKNINRKIAYNTQCNLNALNVSFIKKTTQNLKVIKVKLSSEYHDFLNVFDXVQLNKLSSNCFYNHKIELTSDSTFSCCXAYXMFSFKLLKVKKYLNENLSKKFITSS
Ga0272433_1000116541	F033266	N/A	MFSYSFTEEHFKEFQNHFFQIFDVDSSKSSSAASFIHENDESFVETIIFFVFYEIXKTXSLALDEKTDQLYKLNKQQEDEIKKSVCLFICL
Ga0272433_1000116542	F010214	GAG	VSVLFIYDASSLLCSSLTIFYTTISQFDLRFKDERRFLCTHDACDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXRDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVXSQSFDVXLXSIKENAFXSFSXALDFSRR
Ga0272433_1000116543	F055318	N/A	MLRDDEALCVDRVQSFRDRVDFDNLNAHATKSNLHADEKVK
Ga0272433_1000116545	F028367	N/A	LCKLDEILLKENYFKKLFLINIHFISQNQSFNLCSLINNDSVIYIIIHFNLVDKVCKKLKIQFISLIKEKLIKDYDEKIFKKIITHKILLNLIIENYKKLTVSTLIVDIDHHEVILSKFXMNKNEILLNMQNNVIVFFESIEYFYFNFSILFNLKHSS