Scaffold Ga0272433_10001152

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001152
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49172
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028978	Metagenome	189	Y
F032102	Metagenome	180	Y
F037509	Metagenome	167	Y
F066295	Metagenome	126	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000115229	F037509	N/A	MILIFILIQIHSTDNEMSIKKFVYLMIDNIERQNNIKRSIKSMRTYNHVIARESIAQSVASV
Ga0272433_1000115230	F032102	N/A	MKIVDLKKNINESIYKQILETNEIDENCTLLRKAIARDETSYEDIKLKNCRIQNKILYHDSQL
Ga0272433_1000115245	F028978	N/A	MKIADLEEKENDESIYQLILEANRINENCILLHEVVLKDEAQYKDTKLRNCXVQNEILYQNDLLXVLFDEHLQMKLI
Ga0272433_1000115246	F069514	N/A	MQNDXAKLLLMIEFVNNNALFSVIFLISFFLNKDFHSHISFELNVIEYESFRKCLQTTKVENISEHMNKTLKFARESLVKR
Ga0272433_1000115250	F066295	AGAAG	LKTRLQAKENTSSDFIYSERSKYQKISDSSLFTNEKNSTXKNXYEKIQNKLKINVNLFSNERVKLSYIHSRLFNNAAEIIQVRCEXDCVNLYKIIDDLLKELAQLFNDSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIVNLKDKIRSRLXFIXVNQLV