NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001064

Scaffold Ga0272433_10001064


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001064 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51778
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (19.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F037509Metagenome167Y
F064252Metagenome128Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000106414F025887N/AMSDDSFDFKSFIIDVILSNLEKIFRFLALINTEVTDMTFIDESLMSKLCECFDIQSILLSKSKSIXLYDKISD
Ga0272433_1000106428F064252GAGMLNLKNKLKEVLHSANQSRSHQSTKFLSRQSIENYTXCKSFTLFNNDHHKSFKFSNSSVFIDEDESTXDSXRIKIDDKLQTNVDHFVDEIICIVYVISRLKNDAAEHIFVQHHHDALHSYILIYKLLEHFKEIYDELNKNXKCHHKYNTLRQADKSFNVFYFNFMKLFSYLEYNDCILMNDLQNKINNRLQNALSICSENFTLLTRLRIFLQDVNSKQRVNYQLRSKRCTIIIKVTVIFDKCATSLSVTTLIINYDKLTIFSTFKSARSSIICYICKILDHLFKNRSQLNKIDTSTSCAFILRLHEIIISKNKENEKMSFKNNKAKN
Ga0272433_1000106438F096307AGAAGMLYIIVTQINASLKENVLKHKKDVDLKDVCDTKKYVCHEHLLTTCNTKKYVCLKDNRSXLEDARKEKRCXVISESNLSQI
Ga0272433_1000106449F037509N/AMILISIFIQINSTDNKMSIKKFVYLMINDIEXQNNIKKSIESMRTYDHVIAREFIAQSVASVQID

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