Scaffold Ga0272433_10000947

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000947
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55915
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F010214	Metagenome	306	Y
F050043	Metagenome	145	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000094713	F001253	N/A	MKDVLISSTMSSSDDFFALKSLTIECVLSSNEISYSLKSLIDTEAADYLFIDELIMQNVCNHLQIESLSLIKLKSIRRFNNYYAKKLITHAIYLNLTVQDHMKCFAFMLIIRLNQHYMILEKT
Ga0272433_1000094716	F010214	GAG	VSVLFIYDASSLLCSSLTIFYTTMFXFDLXFKDERRFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXLFSXALDFSRT
Ga0272433_1000094718	F075493	N/A	MQSVQAVHEYMLRRLMTSFAVTSRTIHVXNVSRVQISIQIYAFNSDVHCKSAFCFLKIVTHLYHLIAQMQSLCXDCVNVCDAFSVLFSSLISLIFVILHYCDAITCXNRCEEESVSSASQLYLRIFLNEDIQKYYFLDDEXARNDAINFRQTNVY
Ga0272433_1000094726	F050043	N/A	LCFLQSVLLIKIQLXLKKDEVEENEKLRETERVINKSTIIIHSCLCFIASATSFTXKINNAYVLFTHHHCCHLHQVHITYTIYNVIYMHYNXRXIIIQSKISFFLVFSQRFEDFYQELLEXINECTSLFIRVNKDINYXDXE