Scaffold Ga0272433_10000942

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000942
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56070
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (47.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F041516	Metagenome	159	Y
F055319	Metagenome	138	Y
F087980	Metagenome	109	Y
F102180	Metagenome	101	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000094211	F055319	AGCAG	MIEVRVRRLRLVDKMICIQISERNLAQKLNFSYRQRDFFIYTDDVTVINVHDMQNEELLI
Ga0272433_1000094214	F001951	N/A	MIITKFKFINSSRNEKERDKDTVETTVTEMMIFELKELLVDAKIFLTLMNKTIMKMK
Ga0272433_1000094215	F102181	GAG	MIIIHIHALYQTLLSCIQLIFVLLILKYVKKLLEFRSDDDSNKVCRRMNDEKRLFIQDLCDDLNYHHKRLRIQFYIN
Ga0272433_1000094216	F087980	N/A	MKLSYNLLIDDEHAVKQFTQSMIENSVKIFYAMQELQNQVQQHDVITSFLFIIFSSSIYIKLNFQSLVMITQIIAQILNNQSFFIVYFSANSVTVIITSRFKKLLDIFKYEKNKD
Ga0272433_1000094217	F102180	GAG	LTLIITHHDELKELVARAKHFADVATANQECHEKIYKVYNDSQTFLKTMKVMISTKDQTRLQ
Ga0272433_1000094218	F041516	N/A	MTQKVIHIHEVYNLSLKDHEIIHEKENLSNIKKILHMSKESILVKDFNLHHFT