Scaffold Ga0272433_10000935

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000935
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56442
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (13.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F040408	Metagenome	161	Y
F048017	Metagenome	148	Y
F065268	Metagenome	127	Y
F074203	Metagenome	119	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100009351	F008115	N/A	MNFITELSLSEDYNIICTIIYHLIKERHYVFCYXKDDDISVEETIXIMLXNVYRLHDLFSSIVSNRDFQFILTMXKSLCKQLRITASLFTVYHSKIDDQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKDFHPRISFDSDTTDYEITHERLKVRKADDIIIXMKELLSFNCQQLKKTKLIIKAQINKHKRDIIYEINDXVXLFFRNVKITRSCKDLKDKQLESYQITVKARVFYHLHLSVSMKHLHSMFSSKLLXSYSEDFLSEQHAELLRFIIIDDDDDEYXKIDDILNFRRYRGQIQYKIKXKNLDKDNEXYYVNKDEFNDFEKVLNEFHMLYSRKS
Ga0272433_100009352	F048017	AGG	MNTKVDALTXMFLANVSESAQRLEDHFQTILILDRVNVLLVESKANLYQRVCMINQMNEFCDEYRQVMNENKLKFNITKLKNCEIIDSVLFRKDLLXVSENMHTKLLQEVHDQSSISHLDNK
Ga0272433_1000093523	F074203	N/A	MSSCSFIEERFKEFRNHFSQISDADSSKLSSAESFISEDDESFTETVILSVSIENXKTRCMIFDREMNXLNKLSKQRDDEIKELKTRLQTKEITSSNFIYSERSRSQKIPDSFXFTDEKNSTWKNXYDKIQNKLEINVNLFSNERVKLSYVHFRLLNDAADVAQSRRKRDCVNLYKIINDLLKELAELFNDSNKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFIXIDQLVQSDSLKKIHFYLIHLNNDQRVI
Ga0272433_100009354	F008169	N/A	MSKRSSIEERFEEFRSHFSQISETDSSKFFSAESFINEDDESFAETVILSVSIENXKARCMTFDRETDQLNELSKQRDDEIKELKTKLQTKEITSSDFIYSERSRSQKIPDSFXFTDEKNSTXENXYDKIQNKLEINVDLFSNEXIKLSYVHFRLFNDAADVAQSRREHDCVNLYKIVNDFLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIVDLKDKINPRLXFVXIDQLVQPDSLKEIRFYLIHLNNDQRVIXKIKNKANLIKRVDDLSKIIFHRAIVTQSVNHSKSDHLKSRDAVLTSVKEADVLVETCFICHKSGHSSRECSDXPIRINAVNNEYDRFEFDFNSNFDSKN
Ga0272433_1000093543	F065268	N/A	MIRSTELESVSIARYELRNAEKKSLLSQNXTVSEEENTNASLNTEEKNMNALLFDHEMIKISFSTELNAXISTHEADDLVTFIKYMY
Ga0272433_1000093544	F040408	N/A	MYDYKLIFDIHIKNDVMKEEVSAAKKHVEMLQDMQNTLMQX
Ga0272433_100009358	F083460	N/A	MISLSDSQAYSDALLELNASSIKYAMKRQLHELLNHRLNHEESQDSSENDDENEAAEAV