Scaffold Ga0272433_10000894

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000894
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58295
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (33.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F058565	Metagenome	134	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100008941	F058565	AGAAG	MMNCTNRSSADSKTIASDVDSSQENRDAELKHSCDDEENIANIIDLLIKISTLEKEKSKDHS
Ga0272433_1000089416	F040408	N/A	MYDYKSIFDIHIKNNAMKEEVSAAKECIEMLQDVQNTLMQ
Ga0272433_1000089419	F102179	N/A	VINEVEKMSVHSVNENMSTCSAMHVRSMLLRIMILTVQEMYLDKVHFSRNRISQFESTTSRSTDVETLIHKDCNVAEKQLNSVVETVDCKQLISHAIVKVLIIHEMIYDFSSKFIVELIKILQQEN
Ga0272433_1000089428	F048019	GAG	VYAFVMINVVKELIIEHQVKAMNNVISYITNAFKMQTLLIELKEYEDVFLTESVDKLLLHEDHNHAIEITAKSSYESLYNLLNTELATLRQYLNDVLAKE