NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000886

Scaffold Ga0272433_10000886


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000886 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58568
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (34.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F011463Metagenome290Y
F037509Metagenome167Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000088615F037509N/AMILISILIQIHSTDNKTSIKKFVYLMINDIERQNNIKKSIKSMRTYDHMIAEEFITQSVASVQINX
Ga0272433_1000088619F096307GAGMLYIVVTQINASLKEDMLKHKKNVDLKDVCDTKKCVCHKNLLIIHNTKKCVYLENNKSXLEDAKEEKRCXVISELNLSQI
Ga0272433_1000088629F008668N/AMTSFYFNKSFYLRISFNSDTTDYKIIHERLKTRKANDIIIXMKKLFIFDHQQLKKMKQIIEAQINKHKQDVIYEVNDXI
Ga0272433_1000088631F096307AGAAGMLYIVVTQINVSFKENMLKYKKDVDLKNVCDTKKCVCHKHLLTIHNTKKCVYLKDNKSXLEDARKEKRCXVIFKSNLSQIQIRFXLDLD
Ga0272433_100008866F011463N/AMKKLLNFNHQQLKKTKLIIEVQINKHRXNITYEVNDXVXLSFRNIKTTRFCKDLKDKQLNLYQITVKVNIFYHFHLSISMKHLHLIFSSKLLQSYSENLLSEQHSESLRSITIKDDEHXKINDILNFKHYQDQIQYKVKXTNLDKDNKXYYVDKEEFNDSEKVLNEFHKLYSNKSR
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