Scaffold Ga0272433_10000848

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000848
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60077
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (57.32%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F036036	Metagenome	170	Y
F044226	Metagenome	154	Y
F061401	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000084856	F036036	N/A	MLVSLIHHLLSCFNQSFASENQCLIYMIEYIFDSSNLQTFASAFILDDVRIEAHTKVKALVHEEENQ
Ga0272433_1000084861	F000597	N/A	MKDVFISSMISMSDDSFASESLTIECILSSNEISYSLKSLIDIEAADYLFIDEVIAQIVCDQLQIKSLTLIKAKLIQEFDDHYAKKLITHVIYLNLTVQSHTIEIASMLITQLNQH
Ga0272433_1000084877	F061401	N/A	LNNDQRVIRKIKNKVNLIKHVDDLSKIIFHKAVVTQSVNHSKPDHLKSCDAILTSVKEADVLVEICFICHKSDHSFRECSDRPTRINAVNNEYDHFEFDFNSNFNSKN
Ga0272433_1000084878	F006206	N/A	LCKLDKILLEENYFEKLFLIDVFLNFQNQSFSLHSLIDSDSVTHTFIHANLVNKVCEKLEIQSISLTKEKLIRDYDEKISKKIIIHKILFNLIIESHKKLTVSMLIADINHHKVIMSKL
Ga0272433_1000084881	F044226	GAG	MMKFSDNFNIFSIISMISFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVI