Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10000773 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10000773 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63999
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (31.34%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

63999

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (31.34%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F040408	Metagenome	161	Y
F057011	Metagenome	136	Y
F065268	Metagenome	127	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000077334	F005901	N/A	MNDKLIVNVNQFDNETICIVYMLSRLEDNAAKHIYAXCHHDSSRSYYLIYELFKYLKEIYDEVDKNRKCRREYNALRQADKFFNVFYFNLIKLFSYFKYDDCILMNDSQNKINNRLQNILSVCFEDFTSLHRLKIFLQDVNSKQQVNYQLRSERCTVIIKVTVISDKCATTLLSAKTTLIINYVKSIIFSIFKSVRSSIICYIYKISSHLFKNCSQNKINISTS
Ga0272433_1000077342	F040408	N/A	MYDYKLIFDIHIKNDAMKEEVSTAKEHVEMLQDVXNMLMKQX
Ga0272433_1000077356	F070712	GAG	MNNIKEKKFMIKIRKQVIFAEKXDSLNSYKKIKVILSVDSSKSRDATLTNVKETDIQTESCFIYHKSDHFFRECSDQTSRINALKDDKFDXFTLNSESDSDSKN
Ga0272433_1000077357	F057011	N/A	LCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYMLIHDKLVNKVCQKLEIQFISLVKEKLIREYDEKLARKIITHKILFNLMIESHKKLTMLMLIADIKHHEAILSKFXMNKNEILLNIRHDTIVFFNQLNISISIFSISSNTKHSSXSXSTFISSAAHSKIFKMLKHSVLFIQKESFLI
Ga0272433_100007739	F065268	N/A	MTRSTELESESVSIAHYELQNARRESLLSQNXTASEEEDMNASLNTKEENMNALLFNHEMIKISISTELNAXISIHEADDLIIFIKYMC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10000773

Overview

Ecosystem & Geography

Associated Families

Sequences