Scaffold Ga0272433_10000769

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000769
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64224
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (21.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F061399	Metagenome	131	Y
F064254	Metagenome	128	Y
F071806	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100007691	F038009	N/A	MIKASNFQLNYVKLYKRLIELICLKTNKSSRKKRILTLNFXXVFFLNNLKNMTRSFLFQMRNKIKRSLFLVNKLNNSXLLMSKQEVILLLVSKRKTELLLASKLKTELLLVSELKTELLFLNELRTKLLLASKLKTELLLSSKXETRLLL
Ga0272433_1000076910	F000597	N/A	MKDVLISSMTSMSNDSFASKSLTIECVLSSNKISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIKSLTLIKAKSIQEFNDHYAKKFITHVIYSNLTVQDHMIDTAFMLITXLN
Ga0272433_100007693	F023763	N/A	MSRIKCISLFKEIFXAICQSIQLIVDFVKMINDVIVEFRQKLTSTSLITTQLLNXYEILKIFVIHDHLNKVNKVFKLXSSFLESANNDHEFFIINFVVTLDXVMLLQKVSDXMKNLVLIVLKENIFKHIVXNIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSNKEYIFSDEMSEQNSYFTIVINKSSIKVREI
Ga0272433_100007694	F048018	GAG	MIRRHSLSELSMYFLSXKYRXFSCFSHSTRKILLXCRASLQSTSIIXAANLSLILICFHNVXMRISAKSSLRFRMSXFSXDLMFSTLNSSISRFMRVKICKDAEIIKNRCNXTESRVMICDXSFITLISKMSRARFSTISRFKTXVFRIVXCXY
Ga0272433_1000076944	F064254	N/A	MQELYELVSFLLSLSFIXFFNDVTVXNXFNMLIKSIIXMIAVITLMISRSFLKFVMFSLHCIVFHSIFYLEHVNRMCLINIXSLLHLHIIIVTSSTHFSCRNXLKSIFLVHSCVNNALXDFAXFLCNHRCRCVISDVKYXKXAALNLSFQTILHVCLICFHMSVNLVVTSVH
Ga0272433_1000076952	F071806	N/A	MKFQSQIIILDLVQLYLFLIISAFLQILTFMNLKIKEFNIKDVESQLNQNILNLDEDFADIFIQTLXK
Ga0272433_1000076954	F061399	N/A	MNYVDSLSLNIFMNITYKYILVFIDCFIKIKHLILITFIKVEEIINCFYAHVXKHHDLLEFFMSDXDTQFIFNVXKHMCKMLKINVKLLMMYHSEINDQIKKVNAIMKHYLXVFVNYMQNDXAKXLSKVKFVINNASSLIILTLFFLINLNQNSHLNFKSFKSLLKNLMFQAXNKLINVKEFIKKIKKLAEHLCNEMLIAQIIYKFNVNLSCHSCFKYFVEDEVXLNACNLSITHFAVKLNDHNVNFFKIKHVFKNNFLIIELNLSTFMKIHSIFHVILLNHIASDSFLNQHQKSQEFIIVKNDERFXYINSILNFKHDKCYNSSLLKYYINXKDHFFTXKSFHFLNNYEQAFNEYHLVNSVIEELHVLSCVMFQCQCQEL