NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000757

Scaffold Ga0272433_10000757


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000757 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64812
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (22.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F020121Metagenome225Y
F041516Metagenome159Y
F055318Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000075730F055318N/AMLRDDEALCIDYMQSFRNHANFDNLNVHATSNLHADEKVK
Ga0272433_1000075735F041516N/AMTQRVIHIHEAYNLSFRNHKIIHEKENLSNIKKTLHMLKESILVEDFNLHHFTXEESFYS
Ga0272433_1000075750F009580N/AMLVNKMICIQIFECNLAQRLDFFXIQXNFFIYADDVAVVDIYDMQSEEFLIXAFFSDFAXMLQLAVVAQLSLVADFLDLRND
Ga0272433_1000075756F020121N/AMKKLTEHLCDEMLIAQIIYEFNVNLSCCSCSKYFVEDEVXLNACNLSIAYFAVKLNDYNVDFFKIKCVFKNNFLIIELNLSAFMKIHSIFHVIFLSHIASDFLLSQRQKFXELIIIKNDERFXYVNSILNFKRDRCYSSSLLKYYIDXKDHFSTXESFHLLNNCEQTLNEYHLVNSAVEESHVLSCVMSQCQCQEL

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