Scaffold Ga0272433_10000737

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000737
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65931
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (27.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F028978	Metagenome	189	Y
F033265	Metagenome	177	Y
F033266	Metagenome	177	Y
F036994	Metagenome	168	Y
F048017	Metagenome	148	Y
F066295	Metagenome	126	Y
F068292	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000073728	F008115	N/A	MNFITELSLSEDYNIICTIICHLIKKHHYVLCHXENNDISVEETIXIMLXNVYQLHDLLSSIVLNRNSQFILTMXKSLCKRLRITTNLFTVYHSKIDDQMKQVNQDVECKLRIYCNYMQNDXVKCISMMKFSDNFNIFSIISMTSFYFNKDFHSXISFDSDITDYEITHKXLKVRKADDIIIQMKKLLSFDHQQLKKTKLIIKAQINKHRRNVIYEVENXVXLFFRNVKIMRSCKDLKDKQLESYQITVKARIFYHLHLSVSMKHLHLMFNLKLLQSYSEDFLSEQHAELLRLIIINEDDDEHXKINDILNFRCYQDQIQYKIKXKNLDRNDEXYYVDKDEFNDFKKVLNEFHMLYSRKS
Ga0272433_1000073729	F048017	N/A	MFLANVSESAQRLEDCFQTILILDRVDVLLVELKANLYQXVHMINQMNEFCNEYKQVMNENKLKFHITKLKNCEIIDSILFRKDLLXVFKNMHTKLLQKIYDQLSISHLDNKXTIDLIQ
Ga0272433_1000073734	F066295	N/A	MILDRETDQLNKLSNQQDNKIKELKTRLQTKEITSSDFIYFERSRSQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNEXIKLSYIHFRLFNDAADVTQSRCKHDCVNLYKIINDLLKKLAELFNDSDKKVNFRRKYHNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHFQFI
Ga0272433_1000073743	F028978	N/A	LNQIKIADLKEKENDESIYQLILKANKINENCILLHEVVLKDEAQYKDIKLRNYQVQNEILY
Ga0272433_1000073746	F033266	N/A	MSSCSFTEEHFEEFXNYFFQISDADSSKSRTKSSSAASFIHKDDKSFVEMIISLVFYEIXKARSLTLDEETDQLYKLDK
Ga0272433_1000073747	F008169	AGAAG	LKIKLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXKNXYEKIQNKLEINIDLFSNEXVKLNYIHSRLFDDTAEITQTRCKRDCVNLYRIVDDLLKELAELFNDSNKKVNFRRKYYNLIQESKKFSKFYTQFQRLSFYLKYHEKQLIVDLKDKINSHLQFIXINQLVQSDSFKEIRFYLIHLNNDQRVIREIKNKVNLIKCINDLLKIIFHKTVITQSVNHSKSDHLKSCDAILTNVKEADILVESCFICHKSDHSFREYLDXSTKINAVNNEYDRFNFDSNFDSKN
Ga0272433_1000073749	F006206	N/A	LKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVSMLIVDINHYEVILSKL
Ga0272433_1000073755	F033265	N/A	MFHVIKKMMTFQLKKXFESCYETSINCMIYSVLLFXTETFNSYXLCERVFASDXESQLIYSQFIIQRSTIKXNESIKMLNANLEFTAITCKTTESNEYLXXNSATISISSXSSQXLLSTSIKIFILEXVSIQIQLTIKSLMNDXKLEKQMILSFEXKSYXASIINNXKRXSXSLKHKSININETSFIR
Ga0272433_1000073761	F036994	AGCAG	MXDKMIIEADSLVDLLIKEVDYQLVIEAGSLVAREREVDRFTDR
Ga0272433_1000073768	F068292	N/A	MSRQDTQSTQQRVNQKVERSLTFKAHSQRESSTLSDNENENDHHKFIKLSNSFIFIETNDFIXESXNIKIADKLDVNANHYFTEKIYIVYVIFRLEDDADQQIYAKHHVDAFLFYQSLLELLKHLKEIYEDQNLIXKCCCKYIALKQLNKFFSSFYSKFTRIFSFLNYDDVTLMNNIQNKINNHLQNVLSVYLIKFSSLDKLKIFLQDVNNKQXVNYQLHDE