NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000737

Scaffold Ga0272433_10000737


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000737 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65931
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (27.14%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F008115Metagenome338Y
F008169Metagenome337Y
F028978Metagenome189Y
F033265Metagenome177Y
F033266Metagenome177Y
F036994Metagenome168Y
F048017Metagenome148Y
F066295Metagenome126Y
F068292Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000073728F008115N/AMNFITELSLSEDYNIICTIICHLIKKHHYVLCHXENNDISVEETIXIMLXNVYQLHDLLSSIVLNRNSQFILTMXKSLCKRLRITTNLFTVYHSKIDDQMKQVNQDVECKLRIYCNYMQNDXVKCISMMKFSDNFNIFSIISMTSFYFNKDFHSXISFDSDITDYEITHKXLKVRKADDIIIQMKKLLSFDHQQLKKTKLIIKAQINKHRRNVIYEVENXVXLFFRNVKIMRSCKDLKDKQLESYQITVKARIFYHLHLSVSMKHLHLMFNLKLLQSYSEDFLSEQHAELLRLIIINEDDDEHXKINDILNFRCYQDQIQYKIKXKNLDRNDEXYYVDKDEFNDFKKVLNEFHMLYSRKS
Ga0272433_1000073729F048017N/AMFLANVSESAQRLEDCFQTILILDRVDVLLVELKANLYQXVHMINQMNEFCNEYKQVMNENKLKFHITKLKNCEIIDSILFRKDLLXVFKNMHTKLLQKIYDQLSISHLDNKXTIDLIQ
Ga0272433_1000073734F066295N/AMILDRETDQLNKLSNQQDNKIKELKTRLQTKEITSSDFIYFERSRSQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNEXIKLSYIHFRLFNDAADVTQSRCKHDCVNLYKIINDLLKKLAELFNDSDKKVNFRRKYHNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHFQFI
Ga0272433_1000073743F028978N/ALNQIKIADLKEKENDESIYQLILKANKINENCILLHEVVLKDEAQYKDIKLRNYQVQNEILY
Ga0272433_1000073746F033266N/AMSSCSFTEEHFEEFXNYFFQISDADSSKSRTKSSSAASFIHKDDKSFVEMIISLVFYEIXKARSLTLDEETDQLYKLDK
Ga0272433_1000073747F008169AGAAGLKIKLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXKNXYEKIQNKLEINIDLFSNEXVKLNYIHSRLFDDTAEITQTRCKRDCVNLYRIVDDLLKELAELFNDSNKKVNFRRKYYNLIQESKKFSKFYTQFQRLSFYLKYHEKQLIVDLKDKINSHLQFIXINQLVQSDSFKEIRFYLIHLNNDQRVIREIKNKVNLIKCINDLLKIIFHKTVITQSVNHSKSDHLKSCDAILTNVKEADILVESCFICHKSDHSFREYLDXSTKINAVNNEYDRFNFDSNFDSKN
Ga0272433_1000073749F006206N/ALKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVSMLIVDINHYEVILSKL
Ga0272433_1000073755F033265N/AMFHVIKKMMTFQLKKXFESCYETSINCMIYSVLLFXTETFNSYXLCERVFASDXESQLIYSQFIIQRSTIKXNESIKMLNANLEFTAITCKTTESNEYLXXNSATISISSXSSQXLLSTSIKIFILEXVSIQIQLTIKSLMNDXKLEKQMILSFEXKSYXASIINNXKRXSXSLKHKSININETSFIR
Ga0272433_1000073761F036994AGCAGMXDKMIIEADSLVDLLIKEVDYQLVIEAGSLVAREREVDRFTDR
Ga0272433_1000073768F068292N/AMSRQDTQSTQQRVNQKVERSLTFKAHSQRESSTLSDNENENDHHKFIKLSNSFIFIETNDFIXESXNIKIADKLDVNANHYFTEKIYIVYVIFRLEDDADQQIYAKHHVDAFLFYQSLLELLKHLKEIYEDQNLIXKCCCKYIALKQLNKFFSSFYSKFTRIFSFLNYDDVTLMNNIQNKINNHLQNVLSVYLIKFSSLDKLKIFLQDVNNKQXVNYQLHDE

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