Scaffold Ga0272433_10000719

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000719
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66730
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (67.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030208	Metagenome	186	Y
F084193	Metagenome / Metatranscriptome	112	Y
F102636	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000071911	F102636	AGG	LLEVFANVEIEFGAGRGRLVGDGQDVVLDVDEPSTLIGVVDRESLRTLAGTLTRFGLTLRVRSGDRLLLSAGRDTKTGILSRLLRLPGVQLSPLLALRSALGRGNPRP
Ga0272433_1000071940	F030208	AGGAG	MAYRVDREALDEFIGRQVELVEALSIPKLLADVVELRLRHESVIREEVHALWLGAGLATHVGLAIFEEPERFVIAHEPAPLAA
Ga0272433_1000071980	F084193	N/A	ARKQTEGKSRREALRCLKRQLARTVYTTLKNEPPLT