Scaffold Ga0272433_10000678

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000678
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69184
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (17.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032884	Metagenome	178	Y
F055318	Metagenome	138	Y
F070710	Metagenome	122	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100006782	F032884	GAG	MTIRNERVEREECEETKKNGSTMTRVEXERLYAQTIDVIDQREDIKQRL
Ga0272433_1000067833	F104134	N/A	MSLLLSLQSDMIRFLXSVNMSAIFCRICSVNFFCISFISLLFIILIMTSHLLQSDDKLFLRRCFLITISSLVMFAHDVIFVERRMFFCVCNCLLSSXTDVFSFYTFFAMNAFXFTXCFSSELSXRRXISFNAIFFHEXSLLFSFSNIDIFISKSIMLATFSSLLHEHFNLTSLFSCNKSTLLAIVFESALLQFMQFIVIQSSSRFILSYL
Ga0272433_1000067842	F070710	N/A	MTKQSFLQILQYNIRKLLRIQESFLINREVREFNIVAIQKQDCNNNDLQLFSSAHNFFHLVKNSSSQSRTCIYVNKCLRLNQXIVETAESDICSIRILTRNTDDETQTLRLLNVYNSCSLFTTFTERSLIISRLNELLKNDCKQLIIEDFNLHHSHXERXRCFTRHTMTDTLLNVITNARLKLLLKSDTITREAHN
Ga0272433_1000067847	F055318	N/A	MLHDDEVLCIDRMQSFHDYADFDNLNAYVISNSHANEKVK