Scaffold Ga0272433_10000657

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000657
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71077
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (20.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → Herpotrichiellaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F033265	Metagenome	177	Y
F035571	Metagenome	171	Y
F046102	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000065711	F011463	N/A	LKKTKLIIEAQINKHKQDIIYEINDQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVKTFYHLCLFTSIKHIHLMFSFKILQSYSNDSLSDQHIKSLRSITIKDKKHXKINDILNFRCYXDRMQYKVKXKDLDKDNDXYYINKEEFNDFEKVLNEFHTLHLNKSR
Ga0272433_1000065712	F033265	N/A	MMTSQLKKQSELCYETSINCIIYSVLLFXTETLNMYLSCERVFVSDYELLLVYSLLIILRSTIKQSKSIKTLNVNSESTVIICRMIELNEYLXLSSVTMSIHSRSSQXFFSTSIKNFTLEXVSIQIQLTTKSLMNELKLENQMILSFK
Ga0272433_1000065719	F046102	N/A	MKDVLISSTISSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFINELITQNVCDHLQIESLSLIKLKSIRKFNDHCAKKLITYAIYLNLTVQDHIKRFVFMLITRLDQHQMILEKTXMNKIKMTIDMKNDRLQFSSFKTHIKAFIKAHSTVLSSKKIMIEQKSLIST
Ga0272433_1000065722	F010214	GAG	LFIYDTSSLLCSSLTIFYKMMFXFNSQFEDKRCFLHIRDTHDCNVCKAAFFYSMIVIYCAEKYVMKERRVQXKDKVXLYXIILFFSXFNLYHVDVEXIVSINMQSQSFNDXLXSIEENAFXSFFCALDFSHR
Ga0272433_1000065732	F035571	N/A	MLTLLNAFVTXCKIXFYKVSSLHFLFDSSSSLSRXCQTDASNAISDLITVEYICFAFVKIASHVKTSKXLSVNILVMXFTSICXRCMSHYNFMFSXIFKTCMFDFNLIIKLSICMLVIMLNFLDFLVKCVSSYFSDANVTSXVQTHFA