NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000657

Scaffold Ga0272433_10000657


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000657 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71077
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (20.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → Herpotrichiellaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F011463Metagenome290Y
F033265Metagenome177Y
F035571Metagenome171Y
F046102Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000065711F011463N/ALKKTKLIIEAQINKHKQDIIYEINDQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVKTFYHLCLFTSIKHIHLMFSFKILQSYSNDSLSDQHIKSLRSITIKDKKHXKINDILNFRCYXDRMQYKVKXKDLDKDNDXYYINKEEFNDFEKVLNEFHTLHLNKSR
Ga0272433_1000065712F033265N/AMMTSQLKKQSELCYETSINCIIYSVLLFXTETLNMYLSCERVFVSDYELLLVYSLLIILRSTIKQSKSIKTLNVNSESTVIICRMIELNEYLXLSSVTMSIHSRSSQXFFSTSIKNFTLEXVSIQIQLTTKSLMNELKLENQMILSFK
Ga0272433_1000065719F046102N/AMKDVLISSTISSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFINELITQNVCDHLQIESLSLIKLKSIRKFNDHCAKKLITYAIYLNLTVQDHIKRFVFMLITRLDQHQMILEKTXMNKIKMTIDMKNDRLQFSSFKTHIKAFIKAHSTVLSSKKIMIEQKSLIST
Ga0272433_1000065722F010214GAGLFIYDTSSLLCSSLTIFYKMMFXFNSQFEDKRCFLHIRDTHDCNVCKAAFFYSMIVIYCAEKYVMKERRVQXKDKVXLYXIILFFSXFNLYHVDVEXIVSINMQSQSFNDXLXSIEENAFXSFFCALDFSHR
Ga0272433_1000065732F035571N/AMLTLLNAFVTXCKIXFYKVSSLHFLFDSSSSLSRXCQTDASNAISDLITVEYICFAFVKIASHVKTSKXLSVNILVMXFTSICXRCMSHYNFMFSXIFKTCMFDFNLIIKLSICMLVIMLNFLDFLVKCVSSYFSDANVTSXVQTHFA

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