Scaffold Ga0272433_10000646

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000646
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71733
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F018839	Metagenome	232	Y
F046102	Metagenome	151	Y
F057012	Metagenome	136	Y
F068292	Metagenome	124	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000064631	F104136	N/A	MICSIRSVQIFNEQRSMNKSLIXMNLLTSACKLMFNXRNXMLDQLSRHXXFKSLTLLLASQXXSXLXSQSHSLHERNSEDXMLTLLKRNCLKKNFALNARSQNIKHVTVLNQLRYMKLQRIQKTICFHQSSDXEQHAHILLH
Ga0272433_1000064637	F057012	N/A	MIESDMLIFCFINMLNDSFDFKSFIVNIILSSLKRIFXSLVLINIKVTDMMFINDSLISELCEHFDIQSISLFKSKSIHLYDKILNRKFITHALYILITIQEHKNEMMLLLITHLNQHKIIIDNLXLKRNQILINSANDXLISSSNIXTQKLIVSKASSQSAFHXLESSEICEMKQKNLKSMSMIILKQTTNSKSVN
Ga0272433_1000064651	F018839	N/A	VKVVTFDRLTSDLYAAVSIIAIFIKSKDEAKLIELNDFMILLNEDDFSLSQVMTEEIDLFSI
Ga0272433_1000064652	F046102	N/A	MSSSNDFFALKSLTTECVLSSNEISYSLKSLINTEAADYSFINELTAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITYAIYSNLTVQDHMKXFVFMLITQLDQHQMIFEKTXMNKIKVTIDMKDNRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSIST
Ga0272433_1000064653	F068292	N/A	MLRQNTQSAEQXVNQKKAHFQRESSTLSDNENENNHHKFIKLSNSLIFIETDDSIXETXNIKIADKLNVNANHYFTEKICIIYVIFRLKDNADQQIYAKHHVDAFSFYQSLLELLKHLKEIYEDQNLIQKCHHEYIALKQLNKLFSSFYSEFTRIFSFLNYDDVTLINNIQNKINNHLQNALSVCLIKFSSLNKFKIFLQDVNNKQQVNYQLRDEQ
Ga0272433_100006469	F002432	N/A	MXKSLCKRLRITASLFTVYHSEINNQSKQVSQDVERKLRIYCNYMQNNXIKXISMMKFNDNFNIFLITSMTFFYFNKEFHLRMSFDSDTTNYETIHERLEARKADDIIIQIKELLNLNHQQLKKTKLIIEVQINKHRXNIIYEVNDXIXLSFRNVKTTRLCKDLKDKQLNLYQITVKVSIFYYLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHSESFRSITIKDDEHXKINDILNFRCYRDRIQYKVKXTNLDKNNK