Scaffold Ga0272433_10000594

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000594
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75846
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (17.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008668	Metagenome	329	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F086377	Metagenome	110	Y
F089602	Metagenome	108	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000059428	F089602	N/A	MKDEXSNFIKILSEENDNLSDIINIVFHAVNQXKVFYQEIFFLLIEEIVIVNKAICILLQSFAKI
Ga0272433_1000059429	F001951	N/A	MMIMMKLKFINSSMNERERNENTVKMTVTEMIILELKELLVNAKMLLTLMSKTEKKMMK
Ga0272433_1000059435	F094624	N/A	MKHYFQVYVNYMQDDXAKXLFKVEFAINNASLLITLAFFFLININQNSCLDFKLFKSLSENLMFQTQDKLINVEEFIKKMRELTDHLHDEMLITQVIYEFNVNLFHCSCFKYFVEDEVXLNACNLNIIHLAVKLNDHNVEFFKIKRVFEQNSLIIKLDFSASMKVHSIFHAILLSHIANDLLLNQHQKS
Ga0272433_1000059445	F086377	N/A	MIQRFXNQKQRILILDCDSVQISIVHAEAKFFFEFLDEENRDDHLKVTDLNEIFAQILIQITMKF
Ga0272433_1000059450	F009580	AGCAG	MIEVRVKRLKLVDKMICIQISEHDLAQKLNFFHEQQDFFIYTDDIIVVNVHDTQSEKFLIXAFFSNFTXMLQFAIVTQLSLVTDFLDLRNNQSLILNDNNNKA
Ga0272433_1000059451	F008735	N/A	MREIAIIVYIHALYQTLLSDIQLIFVLLILKYVEKLFEFNESRDSNRICKEMNDERKLIVQDLCNNLRYYHKRLRIQLYINXRTENDEQKXSDNIMLLNLILKLLHYAKDLNXIFNHTLSELFNSMLIINQEIVKXLYLNERILKXDFNIXKCCRKCRSFIMLKTRLN
Ga0272433_1000059470	F008668	N/A	MKFSDNFNIFLITSMILFYFNKEFHSRMSFDSDTTDYETTCEQLKARKADDIVIXMKELLSFDHQQLKKTKLIIEVQINKHKXNVIYEVNDXV