Scaffold Ga0272433_10000521

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000521
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82903
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (24.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F028368	Metagenome	191	Y
F036035	Metagenome	170	Y
F040408	Metagenome	161	Y
F048017	Metagenome	148	Y
F050043	Metagenome	145	Y
F055318	Metagenome	138	Y
F086375	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000052131	F086375	N/A	MFTLFINSKSITSXNHDENXFNEIKEHYKXQNNNHVALFKXLHKLKLFNIXKEVNKINKAAIKDNVKDEIKQERKNKDIYDNASQ
Ga0272433_1000052140	F028368	GAG	LCKLNEILSEENYFEKSFLIDVFLNSQNRSFSLCSLIDSDSVAHMLIHANLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMRNNVIVFLNQLNTSISIFLISLNSKHSSXSRLTSLSFIIQTKILIMLKQSISTMTKKKIILNSKHKCSFVQNSTELIKEESDXSLCFIHDXYX
Ga0272433_1000052142	F048017	N/A	MKNKQLSRXQVNYLNVLSKFNFQIIFKSGKMNIKVNALIRMSLANVSESAQHLEDCFQTILILDRVDVLSVESKANLYQXVYKVNQTDKFCSKYKQAMNENKLKFHITKLKDCEIIDDILFRKDLLXISENMHTKLLQEVHDQSSIFHLDNK
Ga0272433_1000052143	F008115	N/A	MNFIIELSLSENYNIICTIICCFIKECHYVFCHXENNDISVEETVXIMLXNVYXLHDLFSSIVSNRDSQFISTMXKSLCKRLRITASLFTVYHFEIDDQLKRVNQDVEHELRIYCYYMQNDXVKXISMMKFSNNFNIFLITSMTLFYFNKEFHSXMSFNSNTTDYKTTHERLEAKKADDIVIXMKELLSFDHQQLKKTKLIIKVQINKHKQDVIYEVNDXVXLSFRNVKTTRLCKDLKDKQLSFYQITAKVSIFYHLRLSISMKHLHLMFSLKLLQSYSEDFLSEQHAELLRLIIIDDDNDEHXKINDILNFRRYQD
Ga0272433_1000052156	F036035	N/A	MKDRMKDDAMQRKHHELEKVSKNHERDNNDHLNNTFNKHTESISDCDIIKKSDERKRK
Ga0272433_1000052175	F055318	GAG	LNDIEALRDDEALCVDRVQSFRDRADFDNLNAHATSNLHADKKVK
Ga0272433_1000052186	F050043	N/A	MIEKNKVEENEKLREIERAINKSTIIIHSCLHFIISTTSFTXKINNVYVLFTCHHCCYLHQLHITYTIYNVIYTHYNXRXIIIQLKVSLFLIFSQRFEDFYRELLEXINECTSSFIRVNKDINSXDXEXTHLEEKTIIMMNXCIKIRSETRIRN
Ga0272433_1000052189	F040408	N/A	MYDYKLIFDIHIKNDAMKEEVSTAKERVEMLQNMQNTLMKQX