Scaffold Ga0272433_10000513

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000513
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83811
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (15.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F018839	Metagenome	232	Y
F023763	Metagenome	208	Y
F028978	Metagenome	189	Y
F040408	Metagenome	161	Y
F041516	Metagenome	159	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000051332	F094622	N/A	MFALKQKVYLNDSNSKDDVTAIMMKMNXKLDKRLRELALVIIHHDELKELVAKVKHFADVITVNQEYHEKIYKVYNDSQTSLKIMKVMISTKDQTRLQXV
Ga0272433_1000051339	F001253	GAG	VTFIKDMMKDVLISSTMSSSNDFFVSKSLTIKCVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTVQDYMKCFVFMLIT
Ga0272433_1000051341	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIKLNDFTILLNEDDFSLS
Ga0272433_1000051343	F028978	N/A	MKIADLKEKENDKSIYQLILEVNKINKNCILLHEVMLKDEAQYKDIKLKDCRVQNEILYQDDLLXVFFNEYL
Ga0272433_1000051348	F023763	N/A	MNFQNCLMLILISRIECILLFRKIFXVTRQSIQLIIDLVEIISDVIVEFKQKFTSISLMMIQLLNXHEILKIFVIQNHLNRIDKVFKLXLSFLKCINNDYKFFIINFVVTLDXVMLLXKVSDXMKNFVLIILKENVFEYIVXSIDFYHNLVIXITMMKNNLKSEDFLKNVECNLTFLKLNKEYIFSDETSKQSSYFTIVINESFIKVREI
Ga0272433_1000051355	F001951	N/A	MRIIIKLKFIDSLKNEKEKDKDTVETTVTKMIIFELKELLVNVKIFLTLMNEMMMKMK
Ga0272433_1000051371	F040408	N/A	MYDYESIFNIYIENNAIKEEVSAVKEHVEMLQDVQNTLM
Ga0272433_1000051384	F041516	N/A	MIQKVIHIHKAYNLSLKDHKIIHEKENLSNIEKMLHMSRKSILVKDFNLHYFTXEESFYS