NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000488

Scaffold Ga0272433_10000488


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000488 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85283
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (20.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033265Metagenome177Y
F036994Metagenome168Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000048831F036994N/AMXDKVIIEADSLVDLLIEEIDYXLALEADSLVAREREIDXFTDR
Ga0272433_1000048845F033265N/AMMTSQLKKRVESCYETSINCMIYSVLLSXTETFNSYQLCERVFADDXESQLVYSQSIILKSMINXNKSIKTLNANLESTAITCRMTESNEYLXXNSVTISIFSQSLQXLFFTSIKNFTLEXVLIQIQLTTKQLVNDLKLEKQMILSFEXKSYXASTVNNXKKRSXSSKFRLINIDETSSM
Ga0272433_1000048858F075493N/AMXSVQTMHEYMLHRLMTSFAVTLQAICAXNIFRVQINIQIYTFDSDVYYENAFCFLKIIMHLYHFIAQMQSLCXDYIDVCNAFFILFSSLILLIFVILCYYNAIACXNHCEEENASFASQLYLCIFLNEDIQKYYFLDNE

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