Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10000454 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 88761 |
Total Scaffold Genes | 101 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (18.81%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021452 | Metagenome | 218 | Y |
F036035 | Metagenome | 170 | Y |
F061400 | Metagenome | 131 | Y |
F070710 | Metagenome | 122 | Y |
F098340 | Metagenome | 103 | Y |
F102180 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_1000045413 | F061400 | N/A | MFLKYYNCIINLNSEKTIIEAXNIYHKEEDEDNAIDEAADSFRADLQNVLCFIIV |
Ga0272433_1000045417 | F102180 | GAG | LILIITHHDELKELVARTKHFTDVATVNQECHKKIYKVYSDSQTSLKTVKAMISTKDQTRLQQVQIAHESI |
Ga0272433_1000045418 | F036035 | N/A | MKDKMKDDVMQREHHELEKASRNHEHDDNNYSNDILNKHTESISDCDVIKQSDERERK |
Ga0272433_1000045446 | F021452 | N/A | MLDDSFDFKPFIVNVILSSLEKIFRSFALINIKVTDMTFIDDLLISELCERFDIQSISLFKSKSIRLYDKTLNRRFITHALYISITIQEHKNKMMSLLITHLDQHKIIIDNFXLKRNQILIDSANN |
Ga0272433_1000045448 | F098340 | N/A | MIKVVAYXTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEMISVMSLKKLKKKLSIVYHDFLNVFDKEKTTQLFLHXSYDHKIEVKDESQSSKSQLYLMLSHKL |
Ga0272433_1000045467 | F070710 | GAG | MINQKMRQILDDXEHSKILLFVKSTTVTDNFMMKQSFLQILQYNIRKSLKIQKLFLINKEVHDFDIVIIQKQSHNINNMQLFNSAHNFFYLVKNTSSQSRTCIYVNKCLKLNQXMIETVESNICLIRILTRNTNNKMQTLQLINIYNLCSLFFTFIKKSSIISRLSELLKDDCKQLIIRDFNLHHSH |
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