NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000454

Scaffold Ga0272433_10000454


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000454 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88761
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (18.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F036035Metagenome170Y
F061400Metagenome131Y
F070710Metagenome122Y
F098340Metagenome103Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000045413F061400N/AMFLKYYNCIINLNSEKTIIEAXNIYHKEEDEDNAIDEAADSFRADLQNVLCFIIV
Ga0272433_1000045417F102180GAGLILIITHHDELKELVARTKHFTDVATVNQECHKKIYKVYSDSQTSLKTVKAMISTKDQTRLQQVQIAHESI
Ga0272433_1000045418F036035N/AMKDKMKDDVMQREHHELEKASRNHEHDDNNYSNDILNKHTESISDCDVIKQSDERERK
Ga0272433_1000045446F021452N/AMLDDSFDFKPFIVNVILSSLEKIFRSFALINIKVTDMTFIDDLLISELCERFDIQSISLFKSKSIRLYDKTLNRRFITHALYISITIQEHKNKMMSLLITHLDQHKIIIDNFXLKRNQILIDSANN
Ga0272433_1000045448F098340N/AMIKVVAYXTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEMISVMSLKKLKKKLSIVYHDFLNVFDKEKTTQLFLHXSYDHKIEVKDESQSSKSQLYLMLSHKL
Ga0272433_1000045467F070710GAGMINQKMRQILDDXEHSKILLFVKSTTVTDNFMMKQSFLQILQYNIRKSLKIQKLFLINKEVHDFDIVIIQKQSHNINNMQLFNSAHNFFYLVKNTSSQSRTCIYVNKCLKLNQXMIETVESNICLIRILTRNTNNKMQTLQLINIYNLCSLFFTFIKKSSIISRLSELLKDDCKQLIIRDFNLHHSH

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