Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10000454 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10000454 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88761
Total Scaffold Genes	101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (18.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

88761

Total Scaffold Genes

101 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (18.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021452	Metagenome	218	Y
F036035	Metagenome	170	Y
F061400	Metagenome	131	Y
F070710	Metagenome	122	Y
F098340	Metagenome	103	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000045413	F061400	N/A	MFLKYYNCIINLNSEKTIIEAXNIYHKEEDEDNAIDEAADSFRADLQNVLCFIIV
Ga0272433_1000045417	F102180	GAG	LILIITHHDELKELVARTKHFTDVATVNQECHKKIYKVYSDSQTSLKTVKAMISTKDQTRLQQVQIAHESI
Ga0272433_1000045418	F036035	N/A	MKDKMKDDVMQREHHELEKASRNHEHDDNNYSNDILNKHTESISDCDVIKQSDERERK
Ga0272433_1000045446	F021452	N/A	MLDDSFDFKPFIVNVILSSLEKIFRSFALINIKVTDMTFIDDLLISELCERFDIQSISLFKSKSIRLYDKTLNRRFITHALYISITIQEHKNKMMSLLITHLDQHKIIIDNFXLKRNQILIDSANN
Ga0272433_1000045448	F098340	N/A	MIKVVAYXTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEMISVMSLKKLKKKLSIVYHDFLNVFDKEKTTQLFLHXSYDHKIEVKDESQSSKSQLYLMLSHKL
Ga0272433_1000045467	F070710	GAG	MINQKMRQILDDXEHSKILLFVKSTTVTDNFMMKQSFLQILQYNIRKSLKIQKLFLINKEVHDFDIVIIQKQSHNINNMQLFNSAHNFFYLVKNTSSQSRTCIYVNKCLKLNQXMIETVESNICLIRILTRNTNNKMQTLQLINIYNLCSLFFTFIKKSSIISRLSELLKDDCKQLIIRDFNLHHSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10000454

Overview

Ecosystem & Geography

Associated Families

Sequences