Scaffold Ga0272433_10000403

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000403
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93957
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (20.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F024448	Metagenome	205	Y
F039410	Metagenome	163	Y
F044227	Metagenome	154	Y
F048018	Metagenome	148	Y
F075493	Metagenome	118	Y
F076668	Metagenome	117	Y
F080690	Metagenome	114	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000040315	F080690	N/A	MKSSHNFSIDNEHAVEQFTQSMIEISVEIFRVMQELQNQVQQHNVIILSSFIIFSSSIYIKLNSQFLMMIAQIIVQILNNQSSFIIHLSANFVTVIITSKFKKLLNIFKYERDKNXLNAXKQSLIQCMNMNDDHYFSHQVKIIYVESXLIINKKVYNLMNQYXVNNLCIIFIFADXXHKLCHYCENSFKTEDARLYFHETLKQDMNNFVNYYNLFYQKKKCSLMKDFSLIDCLKRNVNYFTQVITFFLLQF
Ga0272433_1000040322	F001951	N/A	MIMTKFRFIDSLKDEKERDEDTVKTTVTKIMIFEFKELLVDTKMFLTLMNKMIIKMK
Ga0272433_1000040334	F044227	N/A	MQLQIKSSNDEACIHALLKLIAFAIKNVTKYXLFKLLYNCYHHEESQSSSEDDDENKALEAI
Ga0272433_1000040344	F076668	N/A	MTCLLLTSXFLACASARKKLMNSTDNYVIKETISVFASTKKIMHMSNALLINMLMLCNRKLKDATNQKXLHCVRFENIRSQLKISFSKXSSNDLXERLCMTVLAQICYHTTIAFSALFXVLFKKLLKTLYAFLXKVSALLFHIITLVV
Ga0272433_1000040352	F075493	N/A	MRSVRAVQKYMLRRLMTSFAVASRTIRAXNISRVQISVQIYAFNSDVHCKSAFCFLKIITHLYRLIAQMQSLCXDCVDVCDAFSILFPSLILLIFVILHYCDAIACXNHCEEENVSSASRLYFRIFLNEDIQKYYFLDDEXARNDAINSRQMSAY
Ga0272433_1000040354	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSRFDSRFEDERHFLRTRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILFFSXLDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFPRR
Ga0272433_1000040355	F010214	GAG	MLFIYDALSLFCSSLMIFYTTMFRFNLXFKDERCFLCTCDAHDCNICKAVFSYSMIVIHCTEKYVMKERFTXXEDRVXLYXVTLFFFXFDLCHVNVEXIVSINVQSQSFDIXLXLMKENVFXSFSXALDFSRR
Ga0272433_1000040357	F008735	N/A	VNLLIYDESXLNINDFNSMKEIMIIIHVHVLYQTLLSCIQLIFVFLIIKYVKKLLESKSNDDSDRIYKEVNDERRLIIQDLCNDLSYYHKRLRIQFYIDXRTENDEXRXNDNIMLLNLILKLLHYVKDNNNNNKFIHSCDID
Ga0272433_1000040361	F048018	N/A	MTLSXVSXMIQRRSLSELSMYFLSXKYRXFSCSSHLTRKILLXCCVSLQSTLIIXAVNLSLILICFHNVXVRISAESSSRFRMFXFSXDLMFSTLNSSISKFMKARIYKDAEITENKCNXTESKAMICDXSFMTLMSKTSRVRFLTILKFKTXVFRIV
Ga0272433_1000040366	F083460	GAG	MXLQIKSSDSQAYSDALLELNASSIKYAARCQLHELLNHCLNHEESQGNSENNDENKAAEAV
Ga0272433_1000040370	F002432	GAG	MIKFSENFNIFSIISMISFYFNNNFHSXMSFNSDTTDYETTCECLEARKADDIVIXMKELLIFDHQQLEKTKQIIKTQINKQKXDVIYEVNDXVXLFSRNIKTTKLCKDLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSLKLLHSYS
Ga0272433_1000040378	F024448	N/A	MSMSNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCNQLQIKSLTLIKAKSIREFNDYYAKKLITHVIYLNLTVQDHTIDTASMLITRLNQHQMILEKTXINKINLVINMQINSLXFSNFNSSISKSIVLFSSHRIILK
Ga0272433_1000040379	F005901	N/A	LHSYISIYELLKHLKEIYNELNKNRKCCHEYNALRQADKSFNVFYFNFIKLFNYLEYNDCILMNNLQNKINNRLQNTLSVCLKNFTSLIRLRIFLQDVNSKQRVNYQLCSERCTIIIKVTVVSDKCVTSLSVTTLIINYVKLTIFSTFESVRSSIICYICKIFDHLFKNCSQLNKINTSASHAFISRLHEIIILKNKENEKMSFKNSEAKN
Ga0272433_1000040382	F039410	N/A	LYVISLLISIINKVKTSVXFFFEXFNSVLNEVVFMFQIENDFFXAVIEMSRLSIIKILVXVIEENKVDRSQLECFELSKIEKIEIEVFNXFKKTMSLFCIFNNISFLFIQNLLNMISXXLISAINIDTVDFLXILMMRLNRILXVMIFLNIFSS
Ga0272433_100004039	F002432	N/A	MXKSLCKRLKITASLFTVYHSEINDQSKQVNQDVERELRIYCNYMQNDXVKXISMIKFSDNFNIFLITSMTFFYFNKEFHLQMSFDSDTTDYETTHERLEARKADNIVIXMKELLNFDHQQLKKTKLIIEVQINKHKXNVIYKVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLCLSISVKHLHSMFSLKLLQLYSEDFLSEQHSESLRSITIKDDEHXKIDDILNFRCYQDXIQYKVKXTNLDRNNEXYYVDKEKFDDSAKVLNEFHKLYSNKSR