NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000294

Scaffold Ga0272433_10000294


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000294 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113386
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (18.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F003820Metagenome466Y
F008169Metagenome337Y
F010214Metagenome306Y
F021026Metagenome220Y
F028368Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000029416F021026N/AMIVFCILHQAQSRVSALALIDSNVFAYVFMNKSFMQQHRLFLHLLTYSHRLXELNDQVVLINDITHVIKFTMILNEHVERLFFYVIELNQYFIIMSLSXLHHHFMYINFEHNTLILFSLFCFNHCCQFLVKIYDLN
Ga0272433_100002947F003820N/AMKLFSYLDYDDCTLINNLQSKINNHLQNTLSVCSKNFTSLTRLRIFLQSVNNKQQVNYQLCNKRYTIIIKVTVISDKCAATSLSMMTLIIDYVKFIISSISKSARLSIICYTYKTSSHLSKNCSQNKINTSASQVFIFHLHEIIISKNKNNEKMSSFEDSKTKN
Ga0272433_1000029484F008169AGAAGLKTRLQAKENTSSAFIYSERSRSQKIPNSSLFTDEKNSIXKNXYGKIQNKLKINVNLFLNERVKLSYIHSRLFDDAAEITQARCKHDCVNLYKIVDDLLKELAQLFNDLNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSHLXFIXVNQLVQFDFLKEIHFYLIHLNNNQXVIQEIKNKLKRVNDLSKTIFHKATVVTQSVDHSKSDQLKSRDAILTSIKKADVLVEICFIYHKLGYSFKECLNQSTRINAVNNEYDHFDFDSNFDSKN
Ga0272433_1000029485F028368N/ALCKLDEILLKENYFEKLFLINVYLISQNQSFSLHSLIDSDSIIYMIVHFNLVDKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNNVIVFFNQLNTSISVFSILFNSKHSSXSRLSSFSSIIQTKIFMMLKRFISITAQKESFLIQNINAALFKTLLNHSKKNQIKVFALFMMNINKEIAYNTQCNLNALNVSLIDETTQNLKDIKAKLSLKYHEFLDVFDXTQLSXQRDSSVRDVDYESFDSILCSNRSQKSQEISIQRSSNDVRTLRDQKSHHAEFSLTRQHFF
Ga0272433_1000029486F010214GAGMKVSVLFDYDASSLFCSSLTIFYTTMFXFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXTVSIDMRLQSFNVXLXSMKENAFXSFSXALDFPRK
Ga0272433_1000029490F002432N/AMKFSDNFNIFSITSMTFFYFNKEFHLXMSFNSDTTDYETTCERLEARKADDIVIQIKELLSFNHQQLKKTKLIIKVQINKHKRDITYEVNDXIXLSFRNIKTTRLCKDLKNKQLNLYQITVKVSIFYYLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHSESLRSITIKDDKHXKINDILNFRCYRDQIQYKIKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR

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