Scaffold Ga0272433_10000294

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000294
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113386
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (18.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F003820	Metagenome	466	Y
F008169	Metagenome	337	Y
F010214	Metagenome	306	Y
F021026	Metagenome	220	Y
F028368	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000029416	F021026	N/A	MIVFCILHQAQSRVSALALIDSNVFAYVFMNKSFMQQHRLFLHLLTYSHRLXELNDQVVLINDITHVIKFTMILNEHVERLFFYVIELNQYFIIMSLSXLHHHFMYINFEHNTLILFSLFCFNHCCQFLVKIYDLN
Ga0272433_100002947	F003820	N/A	MKLFSYLDYDDCTLINNLQSKINNHLQNTLSVCSKNFTSLTRLRIFLQSVNNKQQVNYQLCNKRYTIIIKVTVISDKCAATSLSMMTLIIDYVKFIISSISKSARLSIICYTYKTSSHLSKNCSQNKINTSASQVFIFHLHEIIISKNKNNEKMSSFEDSKTKN
Ga0272433_1000029484	F008169	AGAAG	LKTRLQAKENTSSAFIYSERSRSQKIPNSSLFTDEKNSIXKNXYGKIQNKLKINVNLFLNERVKLSYIHSRLFDDAAEITQARCKHDCVNLYKIVDDLLKELAQLFNDLNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSHLXFIXVNQLVQFDFLKEIHFYLIHLNNNQXVIQEIKNKLKRVNDLSKTIFHKATVVTQSVDHSKSDQLKSRDAILTSIKKADVLVEICFIYHKLGYSFKECLNQSTRINAVNNEYDHFDFDSNFDSKN
Ga0272433_1000029485	F028368	N/A	LCKLDEILLKENYFEKLFLINVYLISQNQSFSLHSLIDSDSIIYMIVHFNLVDKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNNVIVFFNQLNTSISVFSILFNSKHSSXSRLSSFSSIIQTKIFMMLKRFISITAQKESFLIQNINAALFKTLLNHSKKNQIKVFALFMMNINKEIAYNTQCNLNALNVSLIDETTQNLKDIKAKLSLKYHEFLDVFDXTQLSXQRDSSVRDVDYESFDSILCSNRSQKSQEISIQRSSNDVRTLRDQKSHHAEFSLTRQHFF
Ga0272433_1000029486	F010214	GAG	MKVSVLFDYDASSLFCSSLTIFYTTMFXFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXTVSIDMRLQSFNVXLXSMKENAFXSFSXALDFPRK
Ga0272433_1000029490	F002432	N/A	MKFSDNFNIFSITSMTFFYFNKEFHLXMSFNSDTTDYETTCERLEARKADDIVIQIKELLSFNHQQLKKTKLIIKVQINKHKRDITYEVNDXIXLSFRNIKTTRLCKDLKNKQLNLYQITVKVSIFYYLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHSESLRSITIKDDKHXKINDILNFRCYRDQIQYKIKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR