Scaffold Ga0272433_10000230

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000230
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129213
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (43.26%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F008668	Metagenome	329	Y
F017941	Metagenome	237	Y
F021452	Metagenome	218	Y
F025887	Metagenome	199	Y
F036994	Metagenome	168	Y
F038010	Metagenome	166	N
F044226	Metagenome	154	Y
F058565	Metagenome	134	Y
F061402	Metagenome	131	Y
F098340	Metagenome	103	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000023022	F008668	N/A	MSFDSDMIDYETICERLEARKANDIVIQMKKLLNFDHQQLKKIKLIIKVQINKHK
Ga0272433_1000023023	F036994	GAG	MIIEAGSLVDLLIEEIDYRLVIEAGSLVAREREVD
Ga0272433_1000023031	F021452	N/A	MTESNILIFCFISMFNDSFDFKSFTVNVILSSLKKIFRSFTLINTEVTNIIFIDESLMSELCEHFDIQSISLLKSKSIQLYDEISDQKSITHTLYTLIMIQEHKNEMMFLLITCLNQYKLIIENL
Ga0272433_1000023033	F061402	N/A	MTEFVNNNAISSSIKQSTFFLNKNFHSHISFNSNLIEYEIIQARIEVDKAKNIFEHIK
Ga0272433_1000023051	F025887	N/A	MFDNSFNFKSFTVDVILSSLEKIFRFFALINTEVIDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISD
Ga0272433_1000023052	F098340	N/A	MIKVAAYQTSVKNKKIKIFFLIINEINKALSSVEDFAKLNKMISVMSLNKLKKKLLIVYHDFLNVFDREKITQLSLH
Ga0272433_1000023059	F001951	N/A	MIITKLRFIDSSKDEKEKDEDTVETTVTKMMILELKELLVDTKMFLTLMNKTMIKMK
Ga0272433_1000023060	F102181	GAG	MIIVHIHALYQTLLSCIQLIFVSLIFKYVEKLLEFKSDDDSDRICKEMNDERRLIVQDLYDDLNYHCKKLRIQFYIN
Ga0272433_1000023062	F044226	GAG	MMKFSDNFNIVSITSMTFFYFNKEFHFQMSFNSNMTDYETTCEQLEVRKANDIVIQMKKLLNFNC
Ga0272433_1000023066	F038010	N/A	MNNDHFMLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHFLLCFSLSEICILQKFDDQSVVFNSITYYAFVKL
Ga0272433_1000023071	F017941	N/A	MKIADLKKNISESIYKQILKTNEIDKNCMLLREVIARDEIQYKDIKLKNC
Ga0272433_1000023077	F000597	N/A	MKDVLISSTMSMSDYFFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIMQIVYDQLQIESLTLIKVKSIQEFDNHYAKKLIIHIIYLNLTV
Ga0272433_1000023081	F058565	AGAAG	MNRTNRSSADSKMIASDVDSSQENRDAESKRSRDDEENVANIIDLLIKISTLEKEKSKDH