NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000219

Scaffold Ga0272433_10000219


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000219 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131897
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (17.83%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F004755Metagenome424Y
F005901Metagenome386Y
F008169Metagenome337Y
F011463Metagenome290Y
F013598Metagenome269Y
F028667Metagenome190Y
F033265Metagenome177Y
F033266Metagenome177Y
F036994Metagenome168Y
F037509Metagenome167Y
F055318Metagenome138Y
F074203Metagenome119Y
F087978Metagenome109Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_10000219109F087978N/AMFNSKLLQLYSEDSLSEQHAELLRLIIIDKDDDEHXKINDILNFRHYQDQIQYKIKXKDLDRNEEXYYVNKKEFDDFEKVLNEFHVLYSRKSR
Ga0272433_10000219110F033265N/AMFSVIKKTMTSQSKKRFESCYETSINCIIYSVLLFRTETFNSYQLCERVFASDXESQLVYSQSIIXRLIIRRNKSIKTLNANLEFTAITCKMTESNEYLXXNSATISISSQLSQXFLSTSIKIFILEXVSIQIXLTTKSFMNDXKLEKQMILSFKXKSYXALIINNXKRRSXSLKHRSININEMSFMK
Ga0272433_10000219113F004755GAGMIQIRKSTFVENINLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINLRLXFIXINQLVQSDFLKEIYFYLIHLNNDQRVIQEIKNKVNLIKYINDLSKIIFHKAVVTQSVNHSKSDHLKLRDAILTNVKEADVLVEICFICHKSDHSFKECSDQPTRINAVNNKYDHFEFNFNSNFDSKN
Ga0272433_10000219118F005901N/AMISLLQTNVDHFVNETICIVYVIFRLEDDAAEHIFAXHHHNASHSYISIYKLLEHLEEIYNELNKNRKCRCKYNVLRQADKSFNVFYFNFMKLFSYFNYDDCTLINDLQNKINNCLQNTLSVCSKNFASLTRLRIFLQDVNNKQRVNYQLRSERCTVIVKVTVVSDKHAATSLSVTTSVINYVKFIISSTSESARSLIIYYICKIFDYLFKNCSQLNKINTFASCAFILRLHEIIISKNKKNEKMSFENNEAKN
Ga0272433_10000219122F055318N/AMLRDDEVLCIDRMQSFRDCTNFDNLNVHAISNLHADEKVK
Ga0272433_10000219143F037509N/AMILILLFIQVHLINNEMNIKKFVYLMIDDIERQNNIKKSIKSMRTYNYVIAREFIAQSVASVQIN
Ga0272433_10000219150F013598N/AMNFIINLFDSFNYNVILTVICRLLKEKHYISCIIDDEEITVERTAKMLIQXVY
Ga0272433_10000219153F000597N/AMKDVLISLIISMSDNSFASESLITECVLFSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIQEFNDHYAKKLITHVIYSNLTVQDHMIDTASMLITRLN
Ga0272433_10000219154F028667GAGMTLKLNKQXIDLQVNHIKRLNELKINQMTINTQEKTIIELREKVLSLKKKQRSVNQLRSRQSIKSRVSMKSLSRQSIENHTQRKSFILFNNDHHKSFKFLNSSVFIDKDELTXNSXRIKIDDKLQTNVDHFVDEIICIVYVISRLEDDAAEHIFTXHHHDALHSYISIYKLLKHLEEIYENQNKNRKCRCKYNALRQADKFFNVFYFNFMKLFSYLEYDDHTLMNDLQNKINNRLQNALLICLKDFTTLYCLKSFLQNVNNKQRVNYQLXSERCMIIIKVIITSEKHATFLLAVTTSIIEYIKSTIFSTSESVRSFIICYICKTSDHLFKNCSQNKINTSASHVFILRLHEIIISKNKENEKITFFFENNEAKN
Ga0272433_1000021920F008169N/AMQSSLNQENQLILVKQTSENKLFNSIKRIDDKESSXIAXESLKKLTNQNIFLINNILSXRLNTXSYVFINTVEHRYSLDLVLSSNFIMSKRLFIKERFKEFQSRFSQTSETDSSKLSSAESFINEDDESFAETVILSVSIENXKTXCMTLNRETDRLNELSKQXDDEIKELKTRLQTKEITSSDFIYFKRSRFQKIPDSFXFTDKKNSTXENXYDKIQNKLEINVNLFSNERVKLSYVHFRLFDDATDVTQSRRERDCVNFYKIVNDLLKELAELFNDSDKKVNFHKEYYNLIQELKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLQFIXIDQLVQSDSLKEIHFYLIYLNNDQRVIREIKNKVNLIKCINNLSKIIFYKAVVTQSVNHSKSDHLKSCDAILTSVKEADVLVEICFICYKSDHSSKECSDXFIRINAVNNEYDCFKFDFDLNFDSKN
Ga0272433_1000021925F011463N/AMSFDSDTTDYKIIHERLKVRKADDIVIQMKELLSFNRQQLKNKKLIIEAQINKHRRDVIYEIDDXVXLFFRNVKITKSCKDLKDKQLELYQITVKARIFYHLHLSVSMKHLHSMFSSKLLQSYSEDSLSEQHAESLRLIIIDDDNDEHXKIDDILNFRRYQDXIQYKIKXKDLNKDNEXYYVNKDEFNDFKKVLNEFHMLYSRKSR
Ga0272433_1000021927F074203N/AMSSCSFIEEHFEEFQNHFSQISDADSSESXTKSSSAASFIHEDDESFAETMILFMFYEIXKTXSLALDEKTDQLYELNKQQEDEIKELKTRLQAKENTSSDFIYFKRSRSQKILDSSLFTDEKNFTXKNXYEKIQNKLKINIDLFSNEXVKLSYVHFRLFNDAAEVIQSRCERDCVNFYKIVNDLLKKLAELFNDSDKKVNFHKKYYNLIQEFKKFNEFYTQFQRLSFYLNYHKKQLIADLKDKIHSHL
Ga0272433_1000021948F036994AGCAGMXNKVIIEAHSLVDLLIEEIDYQLVIEADSLVACEREVDRFTDR
Ga0272433_1000021951F074203N/AMSSCLFTEECFEEFQNRFSQIFNADSLKSRTKSLSAASFIHEDNESFAETIVLLMFYKIXKTRSLAFNEKTNXLYELNKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKILDSSLFTDEKNFTXKNXYEKIQNKLKINVDLFSNKRVKLSYVHFRLFNDAAEVTQFRCKHNCVNFYKIINDLLKELAELLNDSDKKVNFCKKYYNLIQEFKKFNEFYTQFQRLFFYLDYYKKQLIIDLKDKIHLHLQFI
Ga0272433_1000021961F033266N/AMFSHSFTEERFKEFXNRFFQISDADSSKSLSAASFIHEDDKSFDETMIFLMFYEIXKAXSLAFDEETDQLYELNKQQEDEIKELKIKLQAKKKHFFXFHLLXAF
Ga0272433_1000021987F037509N/AMILISLFIQVHLINNEMNIKKFVYLMINDIERQNNIKKSIKTMRTYNYVIAREFIAQSVASVQIN
Ga0272433_1000021993F089602N/AMKDEXLSFIKISSEESNDLSEIIDIALQTVNQQEIFHQRMFFLLIKKIVIVNKTIHVLLQNFAKI
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