Scaffold Ga0272433_10000189

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000189
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 143019
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (21.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F021452	Metagenome	218	Y
F064252	Metagenome	128	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_10000189129	F004755	N/A	LKELAELFNDSDKKVNFRRKYYNLIQASKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFIXINQLVQSDFLKEIYFYLIHLNNDQRVIREIKNKVNLIKHVNDLSKIIFYRVVVTQSVDHSKSDHLKLRDAILTSVKEADVLVEICFICHKSDHSFKECFNQSIRINAVNNEYNDFKFNFNSNFDSKN
Ga0272433_10000189142	F064252	N/A	VNQSXSRQFTKSQASIKNCTXRESFTLFNNDHHKFFKFLNSFIFTDEDESTXDSXRIKINDKFQTNVDHFDNENICIVYVISRLEDDVAEHIFAQHXHDALHSYILIYELFEHLKEIYDKLNKNRKCCHEYNTLRQADKSFNIFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVPDKCATSLSVTTLIIDYVKLTIFSISESVRSSIICYICKILNHLFKNCFQLNKIDTSTSHAFTSCLHEIIISKNKENEKMSCENSEAKN
Ga0272433_1000018922	F087979	N/A	MKEKNENSTFIYMNQAKSRLNNSFINLKLQKFMHMTEIIETELLKLD
Ga0272433_1000018996	F021452	AGTAG	MLISCFINMLNDSFDFKLFIVNVILNSLEKIFQFFALINIEVTDMMFINDSLISELCKCFDIQSISLFKSKLIHSYDETLDXRFITHALYISVTIQEHKNKMMFLLITYLDQHNKIINNLXLKRNQILIDSANNXLISSSNI
Ga0272433_1000018997	F009377	AGAAG	MSNIEEKNMNALFFDYEMIKISINEELNAXIIDKRTDNIIIFIKYMIYQHDIEIETHNDMIQMLKDVNKINIKLKTIQTTLNTIRTRLQKKMRNKNVIIHHLETASSQQSTLISKDXFSKSIKLSDSSLFEDSKQNMNNXLFQMRNKLKMNKNHFSIEELKIAYVKSXVNETMIKHIAFRMRNAIMNSFLEAEEMLLIINKMYDNFNQRHTTQRQFLKLYQNKIFFHDF