NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000056

Scaffold Ga0272433_10000056


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000056 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)238653
Total Scaffold Genes274 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (21.53%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017941Metagenome237Y
F036994Metagenome168Y
F055318Metagenome138Y
F061400Metagenome131Y
F070710Metagenome122Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_10000056194F055318N/AMLRDDEALCVDRVQSFRDRADFDNLNAHATKSNLHADEKVK
Ga0272433_10000056205F070710GAGMINQKIRQTLDDXEQSKSLLFAESTTATNNFMINQSFLQILQYNIKKSLKIQKSFLINKEVCDFNIVVIQKQSCNINDIQSFNSTYNFFYLVKNMSSQSRTCIYVNKCLRFNQXMIETAESDICLIRILTCNTDDKTQTLQLINVYNSCSLFSTFIKKSLIISRLSELLKDNCEQLIVRDFNLHYFHXKEXRCFTQHAVINSLLDIVTNTKLKLLLKSDTITCKTHN
Ga0272433_10000056207F055318N/AMLYNDEALCIDCMQSFRNHTDFNNLNAHAISNLHADEKVK
Ga0272433_10000056234F036994AGCAGMXDRMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDQFTDR
Ga0272433_10000056241F091080N/AMTDFDVXIFNDDINQSFAEFIKIXFLFNQRFSMIILCXSKQVINKNIISFLCSXIMINVYRVYVINFQSKILSYDQINFDFDSDINXISKRSHSFNIKDSSMKVMSMTLVFIRTRNMNIFSKLFKMTSTVNDLKLNESSDMLMKQNMNILLSVTTLMKTDRFLNLQQSHALELSXNSHMLYVLTFCIXSRVFS
Ga0272433_10000056261F061400N/AMNLNSKKTIIKAXNIYRKKEDKDNAIDEAADSFEADLQNVLCSIIV
Ga0272433_10000056268F017941N/AMKIADLEKNISESIYKQILKTNRIDENCTLLREAIVKDKT

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