Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10000056 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 238653 |
Total Scaffold Genes | 274 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (21.53%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017941 | Metagenome | 237 | Y |
F036994 | Metagenome | 168 | Y |
F055318 | Metagenome | 138 | Y |
F061400 | Metagenome | 131 | Y |
F070710 | Metagenome | 122 | Y |
F091080 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_10000056194 | F055318 | N/A | MLRDDEALCVDRVQSFRDRADFDNLNAHATKSNLHADEKVK |
Ga0272433_10000056205 | F070710 | GAG | MINQKIRQTLDDXEQSKSLLFAESTTATNNFMINQSFLQILQYNIKKSLKIQKSFLINKEVCDFNIVVIQKQSCNINDIQSFNSTYNFFYLVKNMSSQSRTCIYVNKCLRFNQXMIETAESDICLIRILTCNTDDKTQTLQLINVYNSCSLFSTFIKKSLIISRLSELLKDNCEQLIVRDFNLHYFHXKEXRCFTQHAVINSLLDIVTNTKLKLLLKSDTITCKTHN |
Ga0272433_10000056207 | F055318 | N/A | MLYNDEALCIDCMQSFRNHTDFNNLNAHAISNLHADEKVK |
Ga0272433_10000056234 | F036994 | AGCAG | MXDRMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDQFTDR |
Ga0272433_10000056241 | F091080 | N/A | MTDFDVXIFNDDINQSFAEFIKIXFLFNQRFSMIILCXSKQVINKNIISFLCSXIMINVYRVYVINFQSKILSYDQINFDFDSDINXISKRSHSFNIKDSSMKVMSMTLVFIRTRNMNIFSKLFKMTSTVNDLKLNESSDMLMKQNMNILLSVTTLMKTDRFLNLQQSHALELSXNSHMLYVLTFCIXSRVFS |
Ga0272433_10000056261 | F061400 | N/A | MNLNSKKTIIKAXNIYRKKEDKDNAIDEAADSFEADLQNVLCSIIV |
Ga0272433_10000056268 | F017941 | N/A | MKIADLEKNISESIYKQILKTNRIDENCTLLREAIVKDKT |
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