Scaffold Ga0272433_10000056

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10000056
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 238653
• Total Scaffold Genes: 274
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (21.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017941	Metagenome	237	Y
F036994	Metagenome	168	Y
F055318	Metagenome	138	Y
F061400	Metagenome	131	Y
F070710	Metagenome	122	Y
F091080	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_10000056194	F055318	N/A	MLRDDEALCVDRVQSFRDRADFDNLNAHATKSNLHADEKVK
Ga0272433_10000056205	F070710	GAG	MINQKIRQTLDDXEQSKSLLFAESTTATNNFMINQSFLQILQYNIKKSLKIQKSFLINKEVCDFNIVVIQKQSCNINDIQSFNSTYNFFYLVKNMSSQSRTCIYVNKCLRFNQXMIETAESDICLIRILTCNTDDKTQTLQLINVYNSCSLFSTFIKKSLIISRLSELLKDNCEQLIVRDFNLHYFHXKEXRCFTQHAVINSLLDIVTNTKLKLLLKSDTITCKTHN
Ga0272433_10000056207	F055318	N/A	MLYNDEALCIDCMQSFRNHTDFNNLNAHAISNLHADEKVK
Ga0272433_10000056234	F036994	AGCAG	MXDRMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDQFTDR
Ga0272433_10000056241	F091080	N/A	MTDFDVXIFNDDINQSFAEFIKIXFLFNQRFSMIILCXSKQVINKNIISFLCSXIMINVYRVYVINFQSKILSYDQINFDFDSDINXISKRSHSFNIKDSSMKVMSMTLVFIRTRNMNIFSKLFKMTSTVNDLKLNESSDMLMKQNMNILLSVTTLMKTDRFLNLQQSHALELSXNSHMLYVLTFCIXSRVFS
Ga0272433_10000056261	F061400	N/A	MNLNSKKTIIKAXNIYRKKEDKDNAIDEAADSFEADLQNVLCSIIV
Ga0272433_10000056268	F017941	N/A	MKIADLEKNISESIYKQILKTNRIDENCTLLREAIVKDKT