Scaffold Ga0272429_1020607

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1020607
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6588
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009446	Metagenome	317	Y
F034417	Metagenome	174	Y
F042663	Metagenome	157	Y
F058564	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_10206072	F009446	AGGGGG	VSDLGEDLARAYEARVAATDVELTPAAVRAVVHELGGGEGRSQVARGNKILAGQLGVAVRTVQRWQKEGGEARNISRSTPGLRISVQGIATEQQRAANARAFRERVMAQGLDVAPCRVMVLVYNEDRARPRNVGDMHIGGDALTEALDALEEGDVAGAAEAFGDAWLETYGMDVDASVTDVVGTFTLDV
Ga0272429_10206075	F042663	AGGAG	MTTQATVSLPSIPPCPAVALDGDISVTTTFRPHDPIGATEVSASIDLPDDTALLNLLDTTIARLTAYRDAYRQAMTANDQPLMDEHADPAPVRAPLPLPVPWYAW
Ga0272429_10206077	F058564	AGGA	MTTKPATPSPAPTWREIAVADIAAGVAPIQASAPDDGVPRVSGGQPLAALADALAPAVIWTCPYCGSDDLRVLYDERRACRVSTLTDTGDPADAAPWPSYAGDECVDIDPASFTFHCDACNSHDITPRKGGGINDLGHRHAA
Ga0272429_10206078	F034417	AGGAGG	MTWAIVTPHSAWLAQATTAWAALEPQAPQGSQLRDLATIDLANFALLIEALAALTPGQVSQELQNLAGLRPVGAVLGIPDRGDTDGDAAAV