NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1007232

Scaffold Ga0272429_1007232


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1007232 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12649
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075493Metagenome118Y
F080690Metagenome114Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10072321F080690N/AVIENSVEIFRVLQELQNQVQQHDVIILSSFIVFSSSVYIELNSQSLAMIAQIIAQILNNQSLFIIHSSVNFVAVFITSRFKKLFNISEYKRDKDXLNAXKQSLIQRMNVNDDHYFSHRAKIVYVESXLIIDKKTHNLMSQYXINDLCIIFIFADRXHKLCYCCDNSFKTKDAHLYLYETLKQDMNNFVDYYNLFYQKKECSLMKDFSLIDCLKLNVNYFTQVIVFVIMNXLIEVRSETRVKDXVKDQI
Ga0272429_100723216F104134N/AMFIVMRTSCVSIAKIRRATCVKLAISFTHIXVFFRFAXASELTAXREISSLLSLQSDMIRFLXSVNMFAIFCKICSINFFCISFISLLFIILIMTSHFLRSDDESSLKHYFLVVIPSLVTFAHDMIFVERRMLFCVCNCLLSSXTDVFDFCTFFMMNTFXFVXCFSSESSXKRXISFNFISFHEXSLFFSFSNIHIFISKSIMLVMFSSSLREHFNSASLFSCDESTSLAIIFESALLQFVQFIIIQSSSRFTLSCL
Ga0272429_10072329F075493N/AMQSVQAMHEYMLRRLMTLFAVTSQAIHVXNISRVQISIQIYAFNSDVHYESAFCFLKIITHLYHFIAQMXSLCXDYIDICNAFSVLFSSLISLIFVILCYCDAIACXNHCEEEDMSSASXLYLRIFLNENIQKYYFLNNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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