Scaffold Ga0272429_1007040

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1007040
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12835
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_10070401	F094624	N/A	LKINIKLSTTYHSEIDDQIEKVNAVMKHYLXVFVNYMQNDXAKXLSEVKFIVNNTSLLITLASFFLINLSQNSRLDFEFSESLLKNLTSQAXDKLFNVKEFIKKMKKLTEHLRDEMLITQIIYEFNVNLFHRSCFKYFVENEVXLNACNLSITCLAVKLNDHNVDLFKIKRVFKNNSLIIELNLSAFMKIYSIFHVILLSHIASDFLSSQRQKS
Ga0272429_100704011	F076668	N/A	MTCLLLTSSFLARASARKMFKNSMYSTDHYVIKETSVFKSTITTKKIMHMSNALSTDILMLCNRKNATNQTLLRCAKFENIRRSQKISFSKXSSKDXLKRLCMIMLKRTCYNMIFTFSALSXVLFKKSLKTLCASLXKVSALLFHIITLVVEFSLTFCFMQTSTXXQFMSNASSFKIKI
Ga0272429_100704012	F086375	N/A	MFILFVNSKSIASRNRGENWFDKIKEHYKRQNNDRIVIFKXLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNAS