Scaffold Ga0272429_1004741

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1004741
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15939
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050043	Metagenome	145	Y
F102179	Metagenome	101	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100474113	F050043	N/A	MIKIQSXLKKDEVEENEKLREIERAINKSTIIIHSCLRFIVSTTSFTQKINNVYVLFTRHHCCRLHQLHITYTIYNVIYTHYNQRRIIIQLKVSLFLVFSQRFEDFYQELLEXINECTSSFIRVNKDINYXNQEXTHLEKKTIVMMNXLIKIKSKTKVRNXIKDQIXVSFETLXLCQDII
Ga0272429_10047416	F104135	N/A	MNXDINVTQQYANALQRSDQTIRTFAAHLSTLKHQLSLYNDEHKRTRLFIKLRSELRVIITNVQSIFITXDALIDLVARLKTNLRKEHILLLKRSQDENLHDXDKVNKKTHLKXKKSHXLTKLNSSSKMSSHASSCYSKNLFNITCYMCNQKNHYFIDCKDKKIKNRSKESDANXVFIDLMSHMSCFKISRKDKLLINTSNHQEKNKKFSS
Ga0272429_10047418	F102179	N/A	LQDEIYCTXVINKVKKMFVHNVNENMNTCSAMHVKSMLLRIMTLAVXEIHLNEVHFLRSRISQFESTNLRSINVEMLIHKDCNVFEKQLNSVAETVDCKQLVSCAIVKVLIIHETTYNFNSKFVVKLIKILQQEDKFAVRLKADETTSI