NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1001929

Scaffold Ga0272429_1001929


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001929 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25801
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F042102Metagenome158Y
F065268Metagenome127Y
F081945Metagenome113Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100192916F098340AGAAGMIEVTAYXTLVKNKKIKIFSLIISEINKALSSVEDFAELNKKTSIMSLNELKKKLSIIYHDFLNVFDREKTTQLSLHRSYDHKIKLEDESQSSKS
Ga0272429_100192918F042102N/AMIQMLKDVNKINIMLKIMQTRLQKENRNKNVIIHHLKAASSXQSILTSEDQFLKLIKLLNSSLFEDSSQNVDNXLSXMQNKLKTNKNHFSIEELKIAFIESXVSEAAIKHIASCMQDIFLNLFLKVEEVLSMINKMYDNLNHHHMTQCQYLKLYQNRIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSDLQXATLNEXITNLNKFVDICMQVDVKLTKLNAQSVVKASVTQAAHSVVSTSTIQLTSSVSSXKKLRRLKLNSIQKELFKKELCFKCKKSEHKAYDCFKTIQVHEIATNSKNDLLLSK
Ga0272429_100192919F065268N/AMTRSSESASIARYELQNARRESLLSQNRTTSEEEDMNASLNTKEKNTNALFFDHKMIKISISTELNAXISAYEASDLVVFIKYMY
Ga0272429_100192924F081945N/AMFSHSFTEEHFKEFQNHFFQIFDADSSKSRTKSSSAASFIHEDDELFAEMIILFMFYEI
Ga0272429_100192928F011463N/AMKVQIKKHRXNIIYEVDDXVXLSFRNVKTTRLCKNLKDKQLDLYQITVKVNIFYHLYLSVSMKHLHSMFSSKLLQLYSEDFLSEQHSESLRSIIIKDNEHXKINDILNFRCYXDXIQYKVKXINLDRDNKXYYVDKEKFDNSEKVLNKFHKLYSNKSR
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