NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1001624

Scaffold Ga0272429_1001624


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001624 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28574
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032883Metagenome178Y
F070711Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100162412F070711N/AMLNDSFTSESLITKCILFSNEISYSLKSLINIKAANYSFINEVIAQNVYN
Ga0272429_10016246F032883GAGMMKFSKNFNIFSIILMTSFYFNKSFHSRMSFDPDTINYEITRTRIKAKKADDITAKMKELLIFDR
Ga0272429_10016247F032883N/AMTSFYFNKNFYLRMSFDLNTTNYETTRARIKARNIIVKMKELLIFDR

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