Scaffold Ga0272429_1000829

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000829
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47739
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (54.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F038010	Metagenome	166	N
F055319	Metagenome	138	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100082948	F087980	N/A	MKSSYNFSIDNERAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIISFLFIIFSSSIYIKLNSQFLVMIAQIITQILNNQSLLIIHLSANSVAVFITSRFKKLLDIFKYEKNKD
Ga0272429_100082950	F001951	GAG	MTMTKLKFIDSLRNERERDEDIVKITVTKMMIFKFKELLIDAKMLLTLINKMMMKTKQD
Ga0272429_100082951	F055319	AGCAG	MIEVRMKRLKLVNKMIYIQISERDLVQRLNFSCKQRDFFIYIDDIIVVDIHDMQSEKLLI
Ga0272429_100082954	F021896	N/A	MKNNLESEDFLKSVECNLTFLRSDKEYIFSDETSERDSYSTIVIDEFSIEVREI
Ga0272429_100082957	F019260	N/A	MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFKLISKLKLNANRYSTLESRLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATFSTGSKATISNSKNLMNLSIVNMKKRDSLILKKHQHRMINHLCLYCDKSKHQTAICNSKLKIQLRVISLFVLAISIDNLAFDTSLALRKV
Ga0272429_100082958	F038010	N/A	MNNDHFVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICILQRFDDQSVVFNSITHYALVKLRVSSEKLEETLFYVTQLSQFSVVLDLL