Scaffold Ga0272429_1000800

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000800
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49103
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y
F035571	Metagenome	171	Y
F039410	Metagenome	163	Y
F058565	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100080013	F058565	N/A	MNCSDADSKMIASDINSLQENKDAKLKHSCNDEENVINIIDLLIKISTLEKEKSKDHS
Ga0272429_100080036	F001951	N/A	MTMTKFRFIDSSRNEKERNEDTVKTTVTEVMVFELKELLINAEMLLTLMNEMMMKMK
Ga0272429_100080037	F009580	GAG	MICIQISEHDLAQRLNFSHRQQDFFIYIDDIIIVNVHDMQSEELLIXAFFSDFAXMLQFAIVAQLSLIADFLDFRNNQNLILNDDNDEV
Ga0272429_100080040	F008169	N/A	MSSHSLTEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIILFVFYEIXKTXSLALNEETDXLYELNKQQEDEIKELKIKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEITQARRERDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIADLKDKIHSRLQFVXVDQLVQSDFLKEIRFYLIHLNNDQRVIREIKDKIKRVNDFSKTIFHRATVVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSGHSFKECLDXSTRINAVNNEYDRFDFDSNFDSKN
Ga0272429_100080041	F039410	N/A	SXYFDDSFALISFKFXVVSSIEETFRAFKSHXVLYAISLLMFVMNRAKTSILFLFEXFNSVLNEAASMLXIKNDSFRINRLSIIKILVXMIEENKDDRDQLECFELKKIEKIEIEVFNXFEKTMTSFHIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLLMMRLSRILXVMIFLNIFSS
Ga0272429_10008006	F035571	GAG	MYVSVFKVSMLTLLNASATXHRVXFXSVSNLHSLFDSSSFLSRXCQTDASNAISDLTTAEYIYLAFVKIASHVKTLKRLSVSILVTXFIFICXRCAFHHSFMFSCIFKIHTSDFNLITEFSIYMLIIMLNLFNFLVKCINSYFSDANVTSXVQAHFAQTSYALLSVLQISSVNLS