Scaffold Ga0272429_1000706

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000706
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54372
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (21.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F057012	Metagenome	136	Y
F074203	Metagenome	119	Y
F087979	Metagenome	109	Y
F089602	Metagenome	108	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100070640	F009580	AGCAG	MIEVRMKRLKLVDKIICIQISEHDLTQKLNFSHRQRNFFIYTDDVTVVDIHDMQSEEFLIXAFFSNFTQILQFAIVIQLSLIANFLDFRNNQNLILNNDNDEA
Ga0272429_100070642	F089602	N/A	MKDEXLSLIEISSEEDDDLNEIIDIALQIVNQXEIFHQKTFFLLIKEIVVVNKAIHALL
Ga0272429_100070643	F008735	N/A	MREITIIIHIHALYQTLLSCIQLIFVLLIFRYVEKLLEFKSDEDSNRVCKKVNDKKRFIIQDLCNDLNYHCKRLRIQLYINXRIENDEXKXNDNIMLSNLILKLTHYVKDLNXIFNHTLSKLFDNMLIINQEIVKXLHLSERITRRDFNVXKRCRKCKSFIMSKIELN
Ga0272429_100070644	F087979	N/A	MKEKNANSTFIYMNRAESRPDSKFIDLRLQKFMHMTEMIETELLKLN
Ga0272429_100070649	F009377	N/A	MIKSTELESESKSVSIARYKLQNARRESLLSQNQTASEEENMNVSLNTEKENTNVLLFNHEMIKISISTELNAXISTHEADDLVIFIKYICQQHDIEIEIHNDMIQMLNDVNKINIELKATQTTLNAVQTHIQKEMKKKNVIIHDLKATSS
Ga0272429_100070651	F104136	N/A	MIFSIRLAQIFSESXLMNELXIXTNSSTSACKSTFDXRNXMLNQLSRHQLLKSLALLLTSXXXSLLRSQLQSLHERNSEYQTLILLERSCLRKNSASNARSQNIEHMTVSSQLRCTKSQRIRKTICFHQSSDXERHTHILLHQYAQXLIXFQVVYCXHHLE
Ga0272429_100070652	F057012	N/A	MLNDSFDFKSFIVDIILSNLEKIFRSLALINIKVTDMMFINDSLISELCECFNIQSISLFKSKSIHSYDKTLDRRSIKHALYISVTIQEHKNEMMSLLITHLDQHKIIIDNFXLKRNQILIDSANDXLISSSNIRILKLIILKASSQSAFHKLESSEICEMKXKNLKSMSMIILKRTTNSKLVN
Ga0272429_100070671	F074203	N/A	MSSRSLTEERFKEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIIPLVFYETXKARSLALDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYRIVDDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHFRLRFIXVNQLVQSDSLKEIRFYLIHLNNDQRVI