Scaffold Ga0272429_1000575

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000575
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65405
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (23.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F035571	Metagenome	171	Y
F038008	Metagenome	166	Y
F041516	Metagenome	159	Y
F086375	Metagenome	110	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100057524	F038008	N/A	MKMKXSYFYMMILXSKSSRVIIVANKKILMNQHHFNTFALKQKVYLNDNNNRENVMMIAMRINXKLNKRLRELILIITHHEELKELIVRAKHLADVMTENQEYYEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIMHKSIQFQEVTLKLH
Ga0272429_100057529	F041516	N/A	MLQTLTNNTQMIQKVIHIHEAYNLSLKNHEVIHEKESLSDIEKMLHMSKECVLVENFNLHHLTXEKSFYSR
Ga0272429_100057533	F086375	N/A	MFTLFVNSKSITSRNRDENXFNEIKEHYKRQNNDRVIIFKRLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNAS
Ga0272429_100057544	F096307	N/A	MLYIVVTQIDASLKENVLKHKKDVGSKDVCDIKKCVCHRHLLTTRNTKKCVCLEDNKSXLEDAKKEKRCXVISESNLSQI
Ga0272429_100057545	F035571	N/A	MYVSVFKVSMFTLLNISATXCKVXFXSVSSLHSLLNSSFFLSRXCQTDALNAISDLITAEYTCLTFVKIALHMKTSRXLSISILVTXFVFICXRYAFYCSFVFSYTSRTHTSDFNLITKFFICMLVIMLNLFDFLVKCVSSYFSDANVASXV
Ga0272429_10005758	F008735	N/A	MKEIMIIVHLHALYQTLLSCIQSILVLLIFKYVEKLLEFRSNEDSDKVCKTMNNKKRLIVQDLCNDLSYHCKRLRIQLYINXRTENNEQRXNDNIMLSNLILKLMHYAKDLNXIFDHTLSELFNSTLIIDQKIVRXLYLSERIIK