Scaffold Ga0272429_1000485

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000485
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76473
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (26.98%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F058565	Metagenome	134	Y
F071806	Metagenome	121	Y
F074204	Metagenome	119	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_10004851	F021896	N/A	IVMKNNFESEDFLKNVECNLIFLKSDKEYIFSDEMNERDNYSNIVIDESFIEVHKI
Ga0272429_10004854	F074204	N/A	MIVFCILHQAQFRVLILALIDSEVSAYVFMNKFFTQQHHLFLYQLTHSCKLQEFDDQVALINDIIHVIEITMILNEYIKKLFFYVIELNQYFIIMNLS
Ga0272429_10004855	F001951	N/A	MIMMKLKFIDSSRNERERNEDIVKTTVTKMMIFELKELLVNAEMLLTLMNKMMMKMKQD
Ga0272429_100048553	F058565	N/A	MNCMNCSNADSKMIASNIDLLQENRDAKLKHLCNDEKNVVNIIDLLIKMSTLKKEKSKDH
Ga0272429_100048563	F071806	N/A	MKFQSQIIALDSVQLHLFSVISTSLQILALMNLEIEEFNVEDIKSQLDQDTLNLDEDSADIFTQTL
Ga0272429_10004857	F102181	N/A	MKEIIIIVHVHALYQILLSCIQSIFFSLKFRYIEKLFEFRSDEDSDRIHKKMNDKKRLIVQDLCDDLSYHRKRLRIQLYID