Scaffold Ga0272429_1000424

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000424
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84969
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F055319	Metagenome	138	Y
F096306	Metagenome	104	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100042483	F096306	N/A	MFAMYDNYAVNSLIVDDDSNKERSCRDNSELHTSMILFNIVTLIVTNVKIVFVESNNK
Ga0272429_100042487	F102181	N/A	MKEVTIIVHVHALYQTLLSCIQSIFVSLILRYVEKLLESRSDEDSDRIRREVNDEERLIVQDLCNDLSYRRERLRIQIIYRLKN
Ga0272429_100042488	F001951	N/A	MTMTKLKFIDSSRNERERDKDTVETTVTEVMIFELKELLVDAEMLLTLMNETMTKTKRD
Ga0272429_100042489	F055319	AGCAG	MIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYTDDITVVDVHDMQSEELLI
Ga0272429_100042492	F021896	N/A	VTKNNLESEDFLKSVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIEVREI