Scaffold Ga0272429_1000393

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000393
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90182
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (30.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F055319	Metagenome	138	Y
F061402	Metagenome	131	Y
F074204	Metagenome	119	Y
F079402	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100039313	F074204	N/A	MIVFCILRQAQSRVFALALIDSEVSAYVFMNKFFAQQHHLLLHQLTHSRRLREFDDQVALIDDITHVVEITMILNEHIERLFFYVTELSQYFIVMSLS
Ga0272429_100039314	F055319	AGCAG	MIEVRMKRLRLVDKMICIQISERDLAQRLNFFREQRDFFIYTDDVTVIDVHDTQSEELLI
Ga0272429_100039315	F001951	GAG	MTMTKLRFIDSSRNERERDEDTVKTTVTKVMIFELKELLVNAEMLLTLTNEMMTKTK
Ga0272429_100039319	F079402	N/A	MNKNHFSIEEMKIAYVKSRVSETMIKHIAFRMRNTITNSFLEAEEILSIINKMYNNLNQHHTTQRQFLKLYQNKIFFHEF
Ga0272429_100039327	F061402	N/A	MTEFVDNNAISSSIEQSAFFLNKSFHSHMSFDLNSTEYEIIQAKIQASKAENIFEHMK