Scaffold Ga0272429_1000380

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000380
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92498
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (16.09%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F038484	Metagenome	165	Y
F057011	Metagenome	136	Y
F057012	Metagenome	136	Y
F065269	Metagenome	127	Y
F070712	Metagenome	122	Y
F086375	Metagenome	110	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100038015	F002432	GAG	MIKFSDNFNIFSITSMISFYFNKEFHSXISFDSDTTNYETTCEXLEARKANDIVIQIKELLSFNYQQLKKTKLIIEVQINKHKRDIIYEVDDXIXLSFRNLKTTRFCKDLKDKQLNLYQITVKVEIFYCLHLSVSMKHLHSMFSSKLLRSYLRNSLSEQHSESLRSITIEDDEHXEISDILNFRRYRDQIQYKVKXTDLNRNDEXYYVNKEKFDDSEKVLNEFHKLYSNKSR
Ga0272429_100038021	F057011	N/A	VLXLNFKNQCIKEXXVXLIYIKLXVRFXLKKLVISFRVIKEIEIISLCSQIEVLLKENYFEKSFLINAFLISQNESFSLQFLIDSDFIIYTLIHIRLVDKVCKKLEIQSILLVKEKLIXDYDETLARKIITHKILLNLTIKSHKKLTVSMLIADIKHHEAILSKLXMNKNEILLNMRHETIVFFNQLNISISIFLISLNTKHSS
Ga0272429_100038025	F086375	N/A	MFILFVNSKFIVSXNHDENWFNEIKEYYKXQNNNHVTLFKXLYKLKLINIXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272429_100038039	F002432	N/A	MQNDXTKXLSMIEFSENSNIFLIVSMILFYFNKRFHSXISFDLDTTDYKTTCEHLKARKVNDIIIXMKELLIFNHQQLKKTKQIIEAQINKHKRDVIYEVDDXVXLFFKNIKTTRSCKDLKDKQLKLYQITVKVEIFYHLHLLISMKQLHSMFSSKLLCSYFNNFLSEQHSESMRSLTIEDDEHXKINDILNFKCYQDRIQYKIKXTELNQDNEXYYVDKEKFEDFEEIMIEFHKLYSNKSR
Ga0272429_100038042	F038484	N/A	MRSILMCIARMLFAFXKSSRIFIIFLLRRDLCAEIVLMFMTCSLYFSHRXFHXSLXYCAIAMLSLVEIMKKKKHHLHLNCIFASSXMKTFRSTIFLMTSKREMMQLTFIKRARISLHACLISCVRSLTRLCSMILFCSMFRXTCSELVYVSVSRVSMFTLLNASAMXCKVXFXSVFNLHSLFDNSYFLSRXCQTDASNAISDLTITEYTCFAFVKIASHVKTSKXLSVSILVTXFVFICRRCMSHHSFMFSCISRTCTSDFDLITEFSICMLVVMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTSCVYRKYVVYVACNIHRARFLCXFFS
Ga0272429_100038044	F070712	N/A	LIQSESLNEIRNYLIRLNNEHRVMSDIKEKKSLNKVRKQVIFADEVSRTFYKKIKVITLVDHLKSHDAILTNVKDIDLQAEICFICYKSDHTSKECSDQSRVNVLEDDEFNHSNSESDSDSKN
Ga0272429_100038045	F038484	N/A	MRLILMCIMRMLSAFXRSSRIFIIFLLRCDLCAEIALTFATRSLYFSHRXFHXYLXYCAIAMLSLVEIMKKRECHLHLDCIFTSSXMKTFKSIIFLMTSKQEMTRLTFVKRACISLHACLISCVRSLTXLCNVILFCSMFKXTCSELVYVSVSRVSMFTLLNTSATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTYLAFVKIASHVKISRXLSVSILVTXFVFICXRCALHCSFMFSCIFRTRTSDFDLITEFSICMLVIMSNLFDFLVKCVSSYFSDANIASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272429_100038057	F057012	N/A	MSXNDSSAXDHCKFEKQSVLIKVVTENDVLIFCFISMSDDSFDFKSFTVDVILKSLEKIFRFLALINIEVTDMTFIDESLMSKLCERFDIQSIQSYDETSDXKSITHALYTSIMISKHKNEIMFLLITCLDQHKIIIENLXLKRNQILVNSANDXLIFSLNIRTSKSVVSKVSIQSAFHRCESSEICEMKQKNLNSIIISMIILKRLTTQKSVNQFIKSVXFIESILRXKQST
Ga0272429_100038058	F065269	N/A	MTRSSESASITHYKLRNARRESLLLQNQTASESEEENMNASLNTEEKNMNALLFDHEIIKISINTELNA
Ga0272429_100038079	F104135	N/A	MFAVYLSTLKHQLSLYSDEHKXAHLFIKLRSELRVIITNVQLIFITXNALIDLVTXLKTNLQKEHVLLLKXLQDRDSYDQTKINKRASFKRKEFHRLIKLDSSLKSSLHALSCYSKDLFEITCXICNQKNYYVIDCKDEKIKNRSKESDANXVFINLMSHMNHFKISRKDKFLMNTSNRXGKNKKFSS