Scaffold Ga0272429_1000348

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000348
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98453
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (33.04%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019260	Metagenome	230	Y
F038010	Metagenome	166	N
F079402	Metagenome	115	Y
F089602	Metagenome	108	Y
F098340	Metagenome	103	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000348105	F000597	N/A	MKDVLISSTMSMSNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKSIREFDDHYAKRLITHVIYSNLTIQDHTVDITFMLITQLKLLEISIERVI
Ga0272429_1000348109	F013598	N/A	MNFIINLFDSSEYNAILTIICRLSKERHYISCIINDENITVKKTAEMLI
Ga0272429_1000348110	F017941	N/A	MKIADLKKNISESIYKQIFETNEIDENCTLLREAIARDKTQYEDIKLKNC
Ga0272429_1000348111	F019260	N/A	MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLELNANRYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVMIEQLVVLLRQVFDDSDKQEITQRFISALRMQNRIFIEYLFDFQQHIDAIKYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRITVQNLFKSKAVIHFVSVTSTVFAYLVKYATFSTGSKATISSSRNFMNLSIVNMKKQDSLILEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVVSLFALAISIDNLAFNTSLVLRKV
Ga0272429_1000348112	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHFLLCFSLSEICILQRFDDQSVVFNSITHYALVKL
Ga0272429_100034861	F102181	N/A	MKEIMIVVHVHVLYQTLLSCIQLIFISFILRYFKKLLESKSNEDSDRVCKKMNNKERLIIQDLYNDLSYYYKRLRIQFYIN
Ga0272429_100034862	F089602	N/A	LNFIKISSEENDDLSEIIDIALQTINQQEIFHQRTFFLLIEKIVIINKVIYVLLQSFTKI
Ga0272429_100034863	F001951	N/A	MMKFKFIDSLKDERERDEDTVKTTVTEMMIFELKKLLVNAEMFLTLMNETMTKMKQD
Ga0272429_100034891	F079402	N/A	MQNKLKMNKNHFSIEEMKIAYVKTRVSETMIKHIALKMKDMITNSFLEAEEILLIINKMYDDFN
Ga0272429_100034896	F098340	N/A	LKKKELINIIMIKVVAYRTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEIIFVMSLKKLKKKLSIVYHDFLNVFNREKTT