NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000335

Scaffold Ga0272429_1000335


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000335 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100843
Total Scaffold Genes130 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (47.69%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F025887Metagenome199Y
F061402Metagenome131Y
F070712Metagenome122Y
F079402Metagenome115Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000335124F008668N/AMTSFYFNKRFHSRMSFNSDTTDYETTHERLEARKVYDIVIQMKELLNFNHQQLKKTKLIIEVQINKQKRDVTYEVDD
Ga0272429_100033526F061402N/AMTEFIDNNAISSSIKQSAFFLNKNFHSHMSFDLNSTEYEIIRAKIQVSKAKNIFKHMK
Ga0272429_100033534F070712GAGMNDIKEKKSMIKIRKQVIFADEVSRTFYRKIKVITFVDHSKSCNAILTNVKDIDLQAEICFICHKSDHTSRECSDQSRVNVLEDDEFNHLNSDSDSDSKN
Ga0272429_100033536F098340GAGMIKVVTYQTLVKKKNVKIFTLIISEINKMLSLIKDSAKLNEMIFVMSLKKLKKKLLIVYHDFLNIFDREKTTQLLLHQSYCYECIRID
Ga0272429_100033537F025887N/AMLDDSFDFKSFIVNIILNSLKKIFRSLALINIKVIDMTFINDSLISKLCERFDIQSISLFKLKLIHSYDKTLD
Ga0272429_100033539F079402N/AMNKNHFSIKEMKIAYVKSRVSKTMIKHIAFRIKDTIMNSFLKAEEILSIINKMYDDFNQHHTTQQQFLKLYQNKIFFHEF
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Institute for Fundamental Biomedical Research
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